Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3271 ATGTCTCAACCTGAATCATCATCGGACTCGAAATCTGGGGCTGGGAAGAAGGACTTCTCCACCGCGATTCTGGAACGTAAGAAGGCGCCAAATCGGCTTGTCGTGGACGAGGCTGTTAACGGTGATAACTCTATTGTCGCCATGCACCCTCAAACCATGGAAAAGTTAGGGCTTTTCCGAGGCGATACTATCCTCATCAAGGGAAAGAAAAGGAAGGATAGTGTTTGTATTGCTCTTGGTGATGATACCTGTGAAGAGCCTAGGATTAGGATGAACAAAGTTGTGAGGTCGAATTTGCGAGTTCGGCTTGGAGATGTTGTGTCTGTGCATCAGTGTACTGATGTCAAGTATGGTAAACGTGTGCACATTCTGCCTATTGATGATACAATTGAAGGTCTCACTGGAAATCTCTTTGATGCTTTCTTGAAACCCTATTTCGTGGAAGCTTATCGTCCCGTCAGAAAAGGAGATCTATTTCTTGTGCGGGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGTGAGTACTGTACGGTTGCTCCAGACACTGAGATCTTCTGTGAGGGGGAACCTGTGAAAAGAGATGATGAAGAAAGACTTGATGAAGTTGGTTATGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATTCGCGAGTTGGTCGAGCTTCCACTTAGGCATCCACAACTTTTTAAGTCAATTGGTGCGAAAGCACCTAAAGGAATTTTGCTTTCTGGACCCCCAGGTACCGGAAAGACATTAATAGCAAGAGCTATTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTTAGGAAAGCGTTTGAAGAAGCAGAAAAGAATGCACCATCCATCATCTTTATTGATGAAATTGATTCTATTGCACCCAAGCGGGACAAGACAAATGGTGAAGTAGAAAGAAGGATTGTTTCACAACTTCTGACTCTTATGGATGGGCTAAAATCCCGTGCTCATGTTATTGTCATGGGGGCCACTAATCGCCCCAATAGCATTGACCCGGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATCGATATTGGTGTTCCAGATGAAATTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCATATGATGTTGATTTGGAGAGAATTTCAAAAAATACTCATGGGTATGTTGGTGCTGACCTTGCTGCTCTTTGCACTGAAGCTGCTCTACAATGCATTAGGGAGAAGATGGACGTCATTGACTTAGAGGATGAGACTATTGATGCTGAAATACTAAATTCCATGGCAGTTACAAATGAGCATTTGCATACTGCACTTGGAACAAGCAACCCATCAGCTCTACGCGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGAGGACATCGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCGGTTGAGCACCCGGAAAAGTTTGAGAAGTTTGGGATGTCACCATCCAAAGGAGTTCTCTTCTATGGTCCTCCGGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTATAAAAGGCCCAGAGTTGCTTACAATGTGGTTTGGTGAAAGTGAGGCCAATGTTAGGGAAATATTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTTTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGGAGCAGTGTTGGGGATGCTGGTGGCGCCGCTGATAGAGTGCTAAATCAACTTCTGACAGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATTATTGGGGCAACTAACAGACCTGACATCATTGATCCAGCACTTCTTCGGCCAGGCCGTCTAGATCAGTTGATCTATATTCCTCTACCTGATGAGGATTCCCGTCATTCGATCTTCAAGTCTTGCTTGAGAAAGTCACCGATCGCGAAAAATGTTGATTTGGGAGCATTGGCTAGGCATACTCAAGGTTTTAGTGGTGCAGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAGAAGGACATAGAGCAAGAGAGGAAGAGGAAGGAAAACCCTGAGGGCATGGATGAAGACTTGGTAGACGAAATAGTTGCAGAGATTAAAGCTGCTCATTTTGAGGAGTCCATGAAGTATGCACGTAGGAGTGTCAGTGATGCTGATATACGCAAATATCAAGCATTTGCTCAGACTCTACAACAATCAAGGGGATTTGGAAGTGAATTTAGATTTTCAAATACCGCAACTAGTGCTATTGTATCTGACCACCTTACAACTACTACTGGAGGGGCAGATGAAGATGATCTATATAGTTAG 2427 0.438 MSQPESSSDSKSGAGKKDFSTAILERKKAPNRLVVDEAVNGDNSIVAMHPQTMEKLGLFRGDTILIKGKKRKDSVCIALGDDTCEEPRIRMNKVVRSNLRVRLGDVVSVHQCTDVKYGKRVHILPIDDTIEGLTGNLFDAFLKPYFVEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCTVAPDTEIFCEGEPVKRDDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGAKAPKGILLSGPPGTGKTLIARAIANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSYDVDLERISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHLHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHSIFKSCLRKSPIAKNVDLGALARHTQGFSGADITEICQRACKYAIRENIEKDIEQERKRKENPEGMDEDLVDEIVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSNTATSAIVSDHLTTTTGGADEDDLYS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3271 808 CDD AAA 486 653 - -
Mtr2g3271 808 SMART CDC48_N_2 32 115 IPR003338 -
Mtr2g3271 808 Gene3D - 9 114 - -
Mtr2g3271 808 Gene3D - 378 469 - -
Mtr2g3271 808 Pfam ATPase family associated with various cellular activities (AAA) 247 376 IPR003959 GO:0005524|GO:0016887
Mtr2g3271 808 Pfam ATPase family associated with various cellular activities (AAA) 520 653 IPR003959 GO:0005524|GO:0016887
Mtr2g3271 808 Gene3D - 115 211 - -
Mtr2g3271 808 Pfam Cell division protein 48 (CDC48), N-terminal domain 32 113 IPR003338 -
Mtr2g3271 808 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Mtr2g3271 808 CDD AAA 234 376 - -
Mtr2g3271 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 767 IPR027417 -
Mtr2g3271 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 468 IPR027417 -
Mtr2g3271 808 Pfam Cell division protein 48 (CDC48), domain 2 133 197 IPR004201 -
Mtr2g3271 808 Pfam AAA+ lid domain 675 716 IPR041569 -
Mtr2g3271 808 Pfam AAA+ lid domain 399 441 IPR041569 -
Mtr2g3271 808 Gene3D - 657 766 - -
Mtr2g3271 808 SUPERFAMILY Cdc48 domain 2-like 114 206 IPR029067 -
Mtr2g3271 808 SMART AAA_5 243 379 IPR003593 -
Mtr2g3271 808 SMART AAA_5 516 655 IPR003593 -
Mtr2g3271 808 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 6 784 - -
Mtr2g3271 808 ProSitePatterns AAA-protein family signature. 623 641 IPR003960 GO:0005524|GO:0016887
Mtr2g3271 808 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 33 770 IPR005938 GO:0016787
Mtr2g3271 808 SMART CDC48_2_2 132 198 IPR004201 -
Mtr2g3271 808 Gene3D - 212 376 IPR027417 -
Mtr2g3271 808 SUPERFAMILY ADC-like 29 112 IPR009010 -
Mtr2g3271 808 PANTHER AAA-FAMILY ATPASE 6 784 - -
Mtr2g3271 808 Gene3D - 470 653 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3271 Mtr-Chr2 46769369 46774260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3271 449 712 Calmodulin-binding Proteins AT3G56690 46.970 4.15e-77 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3271 K13525 - gmx:100783508 1469.91