Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3250 ATGCCTGAGGATATTCCGAATATGAAGGGTTCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCTGATGAGACTTTTGATGATCTCAAGTTTTTCGATTTTCCATTGGAAGATGTGGACGCAAATACTGCTGAAGAAGATTGGAGTGCTCTTGGAGAGCCGTGTTTTGATGTTTTTTCAGTGTCCCCTGCAGTATTCTGTGGTAAAATAAAAACTGAAAATCCCCAACTCGGGGAAGGCTTCTCTGCTCCTTTTAATGGCATTTCCCCAATAATAAAAGAAGCGGCAAGAACAGCTGGACCAACATATGGAAAAACTATTCCCAATCAGAATGTCCCTTTCTATGAAAAGAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTTGAAGGCAGCAGTGCTTCCTCAGTTGAGAATTCCGGCTTTGATCTGCCTGTCATCCCAGTAAAGCGTGCCCGAAGTAAACGCCGGCGTCCTTCAAGCTTAAATCCTGTATTCTCGATTTCTTTCATTGCTAGCTTACAGGCTTTGCATAAGAAGATATCTGCCTCTGAGTCAGATTTAAACAGAGTAAAGAAACAGAAAAGAATGCTCTCAGGTGATATTGAAACGAAGAAATCCTCATCACAAGAGTCAGTTGTCCAGAGAAAGTGCACACATTGCGAGGTCACAGAGACTCCACAATGGAGAGAGGGACCCAACGGTCCCAAAACGCTCTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTATCCTGAATACCGGCCGGCAAACAGCCCCACTTTTGTAGCATCTGTGCACTCAAACAGTCACAAGAAGGTTCTGGAGATGCGAGGTGTAGTCATCAAAGATGGCGTTAGGGTCCTTTCTAAGTTGGCTCCATCAAATGTTCCTGGAAATTCCGTAGGACAGTGTTATCCTGGATCTTTTTGA 939 0.4409 MPEDIPNMKGSWFFDKNFNGLSDETFDDLKFFDFPLEDVDANTAEEDWSALGEPCFDVFSVSPAVFCGKIKTENPQLGEGFSAPFNGISPIIKEAARTAGPTYGKTIPNQNVPFYEKKVVLQYSPVSVFEGSSASSVENSGFDLPVIPVKRARSKRRRPSSLNPVFSISFIASLQALHKKISASESDLNRVKKQKRMLSGDIETKKSSSQESVVQRKCTHCEVTETPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVASVHSNSHKKVLEMRGVVIKDGVRVLSKLAPSNVPGNSVGQCYPGSF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3250 312 SMART GATA_3 212 262 IPR000679 GO:0006355|GO:0043565
Mtr2g3250 312 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 27 281 - -
Mtr2g3250 312 Coils Coil 174 194 - -
Mtr2g3250 312 CDD ZnF_GATA 217 264 IPR000679 GO:0006355|GO:0043565
Mtr2g3250 312 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Mtr2g3250 312 ProSiteProfiles GATA-type zinc finger domain profile. 216 248 IPR000679 GO:0006355|GO:0043565
Mtr2g3250 312 PANTHER GATA TRANSCRIPTION FACTOR 27 281 - -
Mtr2g3250 312 Gene3D - 207 289 IPR013088 GO:0006355|GO:0008270
Mtr2g3250 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 275 - -
Mtr2g3250 312 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3250 Mtr-Chr2 46483571 46489486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3250 21 280 C2C2-Gata Transcription Factor Family AT1G08000 40.441 7.37e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr2g3250 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3250 - - aprc:113853859 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3250 2 46483571 46489486 Mtr4g1725 4 29924859 29928509 PCT