Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3249 ATGAAAGTAGCTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCAGGAGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTTTACTTTCCACAAGGGCATGCAGAACATGCTCAATCCAACGTTGATTTTGGAGATTCTTTCAGAATTCCACCACTCATCCTCTGTAGAGTGGCTTCTGTGAAATTCTTAGCTGACTCTGAAACAGATGAAGTCTTTTCAAAGATAACTTTGATTCCCTTAAGAAATTCAGAGCTTGAAAATGATGATTCTGATGGCGATGGTTCTGAGAATTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACACAGTCTGATGCAAACAATGGTGGAGGGTTCTCTGTTCCTAGATACTGTGCTGAAACGATTTTTCCTCGGCTTGATTACTCGGCTGAGCCACCAGTTCAGACGGTGATTGCAAAGGATGTTCACGGCGAGGTTTGGAAGTTTAGGCATATCTATAGAGGAACACCAAGGAGGCATTTGTTAACAACTGGTTGGAGTAGTTTTGTGAACCAGAAAAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGCTGAAAGTGGAGAACTTTTTGTTGGTATTCGTCGCGCGAAGAGAGGGATTGTTAATGGATTGGAAACACCTTCCGGATGGAGTTCTGGTAATGGAAATTGTGGTCTTGGACCTTATGGTGGTGCTTTTACTGCTTTTTTGAGAGAGGAGAATAAGTTGGGGGGTGTTGGTGGTAATTTGGGAGGTGGAAGAGTGAAAGTGAGTGGTGAATCAGTGAAGGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTAGTTTATTATCCTAGAGCAAGTACTCCTGAGTTTTGTATTAAGACTTCAGCTGTTAAAGCTGCTATGAGAATTCAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTCGAAACCGAAGATTCTTCTAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCAAGTTGTTGATCCTATTCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTCACTTGGGATGAACCAGATTTACTTCACAATGTGAAGCGAGTAAGTCCATGGTTGGTTGAATTGGTATCAAACATGTCGATGATTCATCTCGCACCTTTCTCACCACCAAGGAAGAAACTCCGTTTTCCACAACATCCGGATTTCCCTCTCGATGTTGTCCAGTTTCAAATACCAACGTTTTCAGGCAACCCTTTTAACCCTTTGTGTTGTTTATCTTCTTCGGATAATTATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCGGATCTTCACCTTAACAACAACAAATTTCAGTTAGGTGTGTTTCCAAATAATCGCGAGACGATTTCTAATGTTAGCAACATAACTACCAACCATGATAATAAGAGCAAAGAAAGTATATCATGTCTGTTGACTATAGGAAATTCTCACAAGAGAAGTTTGGAGATCAAATCTGATAATAATGATAATAGACACCAATTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATCTCTAGAAAAGATTCTAGTGATGATGTGTTGTTGTCCAAGAAAAAGGACAAAGAGAAGTGGTTTTTCAGTGATACTACTCAATCTTCTATTTCTGAACAGTTTTCACCAGCAAAATCTTCTACTACTAGTGCTAGTGCTGACTTCTGTTGGCAACTTGGATTAGATACTGGTCATTGTAAGGTTTTCTTGGAGTCAGAGGATGTTGGAAGAACCTTAGACTTGTCCTGTGTTGGTTCATATGAAGAACTGTATAGAAAACTGGCTAAGATGTTTGGAATAGAAAGATCTGAGATGTTGAGTCGTGTACTCTATCGCGATGCAACAGGTGCTGTTAAACAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAGCAAAGATACTAGAAGGGTTTGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGGCCTATGAGCATCTTTGTTTAA 2100 0.4048 MKVAEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVASVKFLADSETDEVFSKITLIPLRNSELENDDSDGDGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAESGELFVGIRRAKRGIVNGLETPSGWSSGNGNCGLGPYGGAFTAFLREENKLGGVGGNLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCIKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSMIHLAPFSPPRKKLRFPQHPDFPLDVVQFQIPTFSGNPFNPLCCLSSSDNYNAPAAGIQGARHAQIGISLSDLHLNNNKFQLGVFPNNRETISNVSNITTNHDNKSKESISCLLTIGNSHKRSLEIKSDNNDNRHQFLLFGQPILTEQQISRKDSSDDVLLSKKKDKEKWFFSDTTQSSISEQFSPAKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATGAVKQTGEEPFSDFMKTAKRLTILMDSGSKDTRRVCITGTRNAERGLDASNKTGPMSIFV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3249 699 Pfam B3 DNA binding domain 108 209 IPR003340 GO:0003677
Mtr2g3249 699 Gene3D - 309 383 - -
Mtr2g3249 699 SMART B3_2 108 210 IPR003340 GO:0003677
Mtr2g3249 699 CDD B3_DNA 107 208 IPR003340 GO:0003677
Mtr2g3249 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g3249 699 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g3249 699 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Mtr2g3249 699 SUPERFAMILY DNA-binding pseudobarrel domain 102 210 IPR015300 -
Mtr2g3249 699 ProSiteProfiles PB1 domain profile. 587 667 IPR000270 GO:0005515
Mtr2g3249 699 Gene3D - 106 210 IPR015300 -
Mtr2g3249 699 Gene3D - 586 671 - -
Mtr2g3249 699 PANTHER AUXIN RESPONSE FACTOR 2 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3249 Mtr-Chr2 46456594 46460558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3249 5 669 B3 DNA Binding Superfamily AT4G30080 58.211 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g3249 B3 1.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3249 - - mtr:MTR_2g094570 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3249 2 46456594 46460558 Mtr4g1726 4 29941141 29944883 PCT