Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3247 ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGAGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTCTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGATTTATGCGCCAGCAACTACACCCTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCCGCGGCTGCTGCTCCTATGAACTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATATTAAAAGATCGCCCAACTTGGTACCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTTCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGAAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTACTGGTGCTGGCCCTAATGCTGCAGCCGCCTCACAGTTTGAGAGGGCTGAAATGCTCCCTAGTGGCTATTTGATTCGACCATGTGAAGGTGGAGGATCGATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGATCTATGAATCGTCGCAAATGGTAGCTCAGAGACTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGACGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGTTGGTCTGTTCTGAACTGTGATGGTGCTGAGGGTGTTACTATTTCAGTAAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTTAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACAAAGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTAGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACACAACAACAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCCGGCAACAGCTCATGCTAACGGAGACGCATCGTGTCCTAACAATCGATGTGTGTTGACTGTTGCCTTTCAGTTTCCTTTTGAGAGCGGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAATATGTCCGGCGTGTAGTTTCTGCCGTGCAGGCGGTTGCAACGGCTATATCTCCATCCAGTGTTAACACTTCTGGTGGAGCAAAGCTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGTTATAGTCATCATCTGGGCGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAAGATATCACACTGGACAAAATATTTGATGAGTCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCATTCATTAATTGGTCATTTATATGA 2520 0.4635 MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHPTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLENGSVVVCERSLSGTGAGPNAAAASQFERAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPIYESSQMVAQRLTIAALRYIRQVAQETSGDVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTKFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNTTTANRTLDLTSGLEVSPATAHANGDASCPNNRCVLTVAFQFPFESGLQDNVAAMARQYVRRVVSAVQAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHHLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3247 839 SMART HOX_1 20 86 IPR001356 GO:0003677
Mtr2g3247 839 CDD bZIP 75 114 - -
Mtr2g3247 839 CDD homeodomain 23 83 IPR001356 GO:0003677
Mtr2g3247 839 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Mtr2g3247 839 Gene3D - 180 371 IPR023393 -
Mtr2g3247 839 SUPERFAMILY Bet v1-like 163 373 - -
Mtr2g3247 839 Pfam MEKHLA domain 696 838 IPR013978 -
Mtr2g3247 839 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Mtr2g3247 839 Coils Coil 88 126 - -
Mtr2g3247 839 Gene3D - 17 90 - -
Mtr2g3247 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 839 IPR044830 GO:0003700
Mtr2g3247 839 SUPERFAMILY Homeodomain-like 20 87 IPR009057 -
Mtr2g3247 839 Pfam START domain 164 370 IPR002913 GO:0008289
Mtr2g3247 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 839 - -
Mtr2g3247 839 SMART START_1 163 373 IPR002913 GO:0008289
Mtr2g3247 839 CDD START_ArGLABRA2_like 158 372 - -
Mtr2g3247 839 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3247 Mtr-Chr2 46418543 46424056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3247 1 839 Homeobox Transcription Factor Family AT5G60690 75.472 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr2g3247 START 8.5e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3247 K09338 - gmx:100804870 1353.19