Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3234 ATGAGTTCTAACCAAAAACAACATCATCATGAACTTTCTTCTTGTAAAAGAACACTTTCTCTTCCAGTTCACAAGGAAAATCTTTTGATGGAAATACCCTGCAAGTCATCAGAAGAATCTTGTTCATCATCATCAAATGATTTTGTTGCAATAAAGATGCCATTAACACCAAGTCCACCTTCAACACAAAGGAGGGTGAATTTTCTTGTTACATCACGTTCTGTTGATGCACCAATTGATAATAATATCAATCTTGGAATTTCAACAACAAGAGCAAAATCATCATCAAATAGAAGTATATTACCAAAATTGAATTTCAGGTATAATAGGACTTCATCATCGGATATTGAAAAGGCGGTAATTGGAGCGCCAGCGCCAGAAAGTTCTTTTGTAGGGCCTCATGAGAAGCCTTCAATCTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTACCTGTTGAAGAAATTGGACGTGTTAACACTGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCTTATAGAAGCCAGGGGACGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCCAAGAAAAAATTACAAGGAAAATGGATAAGTTTTTCCGGGTTGTTCCTTCCACCCCAGGTGTAAAGGAAGTGAAAGAATGGTTAAAAACGTCCACAGCAAAGGATACTGAAAACGACGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGTAAAGGTGAACTTGCCTTGGCTCACCAAGAATGTGCAATTAAGTGGTTTAGTATCAGAGGTAACAAGACCTGTGACGTATGCAAGGAGGAGGTTCAGAACCTCCCTGTCACTCTCTTACGGATCCAAAGTACTCAAACTCAGAATCCGGGAGCAAGGCCTCACCAGGAAGATGACTTCAGGGTTTGGCAGGAGTTGCCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTCGAGCAGCTTTTAGTTGGGAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCATTTTCATGTGTACTCGGTCTAGTCTCCGCTATGACATCTACAACCATGGTGAGGAGCAAGTTCATCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTTTTCGCGCACGTATTTTACCCCTTGTTTGGAAACCTGCAGGTTGGTAAGCAAGCAGTTTTGGCAATTCTTCTTGCATCATTTGCTGGGTTTGGTGTTATGATGAGCGGAAGTTCAGTTATTGCGGAAATACTCAAATGGAGAAGAAGATGGCTGGCTTACTCAGAGCAGCAGCGTCGTGACTCTCAAGTGATGACACAAGAAGGACTATATCCTCAAGGTGTAATCACCCCACAGTCAAGTCTTCCCAATCACAACCAAACCACAGTGCAACTGCAAAATCAACAGAATTCAAGTTTATAA 1512 0.4134 MSSNQKQHHHELSSCKRTLSLPVHKENLLMEIPCKSSEESCSSSSNDFVAIKMPLTPSPPSTQRRVNFLVTSRSVDAPIDNNINLGISTTRAKSSSNRSILPKLNFRYNRTSSSDIEKAVIGAPAPESSFVGPHEKPSISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQGTIARTRSEPVDSQEKITRKMDKFFRVVPSTPGVKEVKEWLKTSTAKDTENDGDDGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQSTQTQNPGARPHQEDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRSKFIWLYASAQFLLVVLFAHVFYPLFGNLQVGKQAVLAILLASFAGFGVMMSGSSVIAEILKWRRRWLAYSEQQRRDSQVMTQEGLYPQGVITPQSSLPNHNQTTVQLQNQQNSSL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3234 503 ProSiteProfiles Zinc finger RING-CH-type profile. 243 305 IPR011016 GO:0008270
Mtr2g3234 503 Pfam RING-variant domain 251 298 IPR011016 GO:0008270
Mtr2g3234 503 SMART ringv_2 250 299 IPR011016 GO:0008270
Mtr2g3234 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 306 IPR013083 -
Mtr2g3234 503 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 471 - -
Mtr2g3234 503 SUPERFAMILY RING/U-box 247 302 - -
Mtr2g3234 503 CDD RING_CH-C4HC3_MARCH 251 299 - -
Mtr2g3234 503 PANTHER OS02G0165000 PROTEIN 5 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3234 Mtr-Chr2 46251060 46254968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3234 239 318 C3H Transcription Factor Family AT2G37950 37.037 2.63e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3234 - - cam:101488558 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3234 2 46251060 46254968 Mtr4g1744 4 30138648 30143460 PCT