Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3224 ATGATGTCTGAAGAAGCAGTTTCTGATACTTCCAACTTCAGAGGCACCTCAAACTCAAACCCTAATCCTCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGGATTCAGAAGTGATTGCTCTATCACCAAAATCACTGATGACATCCAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTTAAGAGAGACCAAAACCTACAGCTACATCGACGAGGACACAATCTTCCATGGAAGCTTAAGCAAAGAAACAAGCTGGAGGTGATAAGGAAGAAAGTGTATGTTTGTCCAGAAAAGAGCTGCGTGCACCATGACCCTAGTAGAGCTCTAGGAGACCTGACAGGGATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGCACTAAAGAGTACAGATGTGATTGTGGCACACTATTCTCCAGGAAAGACAGCTTCTTAACTCACAGAGCCTTTTGTGAATCCTTGGTGGAAGGAAGTGCAAGAATAGGTTCAGTTCCAGCAGTTATATCCAACTTTGGAAACAATCTTTTGATAAACACTCAAGCACCAAGAAATATTCCTCATGGTTTATTTGGGCTTAATCCGGAATATGGTGGATCAGGTCAAGAAACATTCATGGGAAATTTTCCCAATAATAACATCCCTCATCATAGTTATCTTCCAAATTCTAGTGCATTCTCATCATCAGGAGCAAACTCTGATTTAGAATTAGTACACACTTTTGGTTTATTACCACAAGGACAATGGATGAATTACAGATACAATGATCAACATGCAGAAACATCATTTACAAGTAGTGGGGTTCTAAAGTTAGAACAACAACAACAAGAAGACAAAATGCATGATTTGTCTCATTTGTATTCTCAGAACCAATTACAAGGATGTCCAAGTCACGTGTCAACAATGCAAAATACAACTACAAAGGTTATCAATGGTAATAATATTGTTGAAGTTAAGAAATTATTCAACCATGGAAACCATGCTACAAATTTCAATGAAGATCAGCTGAGCTTAACTAGAGATTTCCTTGGTGTTGGTGATGACTCATTGAAGAGAACCTTGTTGCAACAAGAGATGATTCCTAGGTTCAATCCAATAGGATCTGTCACGAACTTGCAAAGTGAGTTTGGTGGACACTATTGA 1245 0.3871 MMSEEAVSDTSNFRGTSNSNPNPPNPNSNSVKRKRSLPGTPDPDSEVIALSPKSLMTSNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKLEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRKDSFLTHRAFCESLVEGSARIGSVPAVISNFGNNLLINTQAPRNIPHGLFGLNPEYGGSGQETFMGNFPNNNIPHHSYLPNSSAFSSSGANSDLELVHTFGLLPQGQWMNYRYNDQHAETSFTSSGVLKLEQQQQEDKMHDLSHLYSQNQLQGCPSHVSTMQNTTTKVINGNNIVEVKKLFNHGNHATNFNEDQLSLTRDFLGVGDDSLKRTLLQQEMIPRFNPIGSVTNLQSEFGGHY* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3224 414 MobiDBLite consensus disorder prediction 1 35 - -
Mtr2g3224 414 MobiDBLite consensus disorder prediction 1 51 - -
Mtr2g3224 414 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 18 342 - -
Mtr2g3224 414 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mtr2g3224 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Mtr2g3224 414 SMART c2h2final6 103 133 IPR013087 -
Mtr2g3224 414 SMART c2h2final6 61 83 IPR013087 -
Mtr2g3224 414 SMART c2h2final6 138 158 IPR013087 -
Mtr2g3224 414 Gene3D Classic Zinc Finger 115 194 - -
Mtr2g3224 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 342 - -
Mtr2g3224 414 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Mtr2g3224 414 Gene3D Classic Zinc Finger 40 112 - -
Mtr2g3224 414 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3224 Mtr-Chr2 46146630 46149364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3224 31 212 IDZ Gene Family AT3G45260 81.868 2.64e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g3224 zf-C2H2_jaz 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3224 K25870 - gmx:100811687 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3224 2 46146630 46149364 Mtr4g1756 4 30293502 30296232 PCT