Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3218 ATGGAAATTGATCTGAATGATTCCATAACTGAAGTTAAGAAGAATGTGTGTAGCAATGGTAAATGTGAGAAAAGTGTTTGTTGTGTTTGCACTTTATCTTCTTCTTCATCACCAACATGTTCATCTTCTAGTTCCACTTCAGCTATTGTGTCTTCATCTTATCTTGAACTATGGCATGCTTGTGCTGGACCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAAGGTCATTTGGAACAAGTTGCATCTTTGTCTCTCTTTTCTTCATTGGAAATTCCAACATATGGTCTTCAACCACAAATACTTTGTAGGGTTGTCAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTGCTTTGCTTCCACAGGCAGAGTTAGCAGGGATGTGTTTGGATGACAAAGAGCCTGAAGGTTTGGAAGCAGATGATGAGGGAAATGGAAGATCCCCTACAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCGGTTCCACGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGGGTGGAAATTTCGCCATATTTACCGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGGGATGCAGTTCTCTTTCTAAGGGGTGAAAACGGAGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAACGGTCTTCCTGAATCAATTATTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCTGTGGCTAATGCTATCTCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCCGATTTCGTTGTGCCTTACCAAAAGTATGCTAAAAGCATCAGGAACCCAGTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTAGCGGTATCGTGACTGGAATGAGTGATTTGGATCCGTATAAATGGCCCAAGTCAAAATGGAGATGCTTGATGGTCAGATGGGATGAGGATATTGGGGCTAATCATCAAGATAGAGTCTCTCCTTGGGAGATTGATCCGTCTACTTCTCTCCCTCCCTTGAACATTCAATCTTCTCGAAGGCTGAAGAAACTGCGGACGGGTCTGCATGTTGAATCACCGAGTCACTTTATCACTGCTGGAGACAGTGGGTTTATGGACTTTGATGAGTCTATAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGAAAGAATTTGATATCAATTCTCTAAGACATACTAATCTTGCATCAAATGGAGCAAGAAAAATTACTTCTTCTGAGTTTACGAGGATTCAACCTTCTAGTTATGCAGACTTCACGGAAATGAACCGGTTTCCTAGGGTCTTGCAAGCTCAAGAAATATATCCATTGAGATCCCTGACAGGAAAGGTTGATCTAAACCTTAACTCTTGGGGTAAAACCAATGTTAGTTACACAAAATATAACCTGCATAATGCAACCAAACTTAACTTTCACTCATTAGGATCAGAAGTTCTTCAAAATTCCTCTTTTCCATATGGTGATATACACAAAGTTGGTCAAGGTAGCAGCATGCTGTGCTCCAAACCAACCAATTTCCAACTAGGGAATGTTTCATTTAATACTCCTTCATCTCAGATAGGTGCATTGAGAAATGAAGTTGGACTGTCTAGTTTCAAAATCCGAAATGAACAGAAGCTGCAGAACGATATTTCGGCTGCTACTTCTCTAGATGCAAACATCAGGATTTCAAATGACGAAAATTTCAAGGAGATGGTAAATCCTTGTAAACTGTTTGGATTTTCCTTATCGGCAGCAGCGGAAACCACCTCACAAAATCTACAAAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTGTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGTCTTCTAAGAGATCCTGACAAAGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCATGAGTTCTGTGATATGGTATCAAAAATCCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAACCAGAGCTGTTTGGAACAGACACCATTGATTATGGAGGCTTCAAAATCTTCCTCGGTGGGACAGCCGGATTCTTCTACAACAGTAGTTAGAATCTAG 2433 0.4069 MEIDLNDSITEVKKNVCSNGKCEKSVCCVCTLSSSSSPTCSSSSSTSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASLSLFSSLEIPTYGLQPQILCRVVNVQLLANKENDEVYTQVALLPQAELAGMCLDDKEPEGLEADDEGNGRSPTKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVGWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIIGNQSCSPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPVTIGTRFKMKFEMDESPERRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIGANHQDRVSPWEIDPSTSLPPLNIQSSRRLKKLRTGLHVESPSHFITAGDSGFMDFDESIRSSKVLQGQEKTSFMSLYYGCDTVTKQKEFDINSLRHTNLASNGARKITSSEFTRIQPSSYADFTEMNRFPRVLQAQEIYPLRSLTGKVDLNLNSWGKTNVSYTKYNLHNATKLNFHSLGSEVLQNSSFPYGDIHKVGQGSSMLCSKPTNFQLGNVSFNTPSSQIGALRNEVGLSSFKIRNEQKLQNDISAATSLDANIRISNDENFKEMVNPCKLFGFSLSAAAETTSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLVSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDMVSKIHIYTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSTTVVRI* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3218 810 Pfam Auxin response factor 294 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g3218 810 SMART B3_2 168 270 IPR003340 GO:0003677
Mtr2g3218 810 ProSiteProfiles PB1 domain profile. 682 766 IPR000270 GO:0005515
Mtr2g3218 810 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 798 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g3218 810 SUPERFAMILY DNA-binding pseudobarrel domain 164 278 IPR015300 -
Mtr2g3218 810 CDD B3_DNA 166 268 IPR003340 GO:0003677
Mtr2g3218 810 SUPERFAMILY CAD & PB1 domains 685 761 - -
Mtr2g3218 810 Gene3D - 165 270 IPR015300 -
Mtr2g3218 810 PANTHER AUXIN RESPONSE FACTOR 11 798 - -
Mtr2g3218 810 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Mtr2g3218 810 Pfam B3 DNA binding domain 168 269 IPR003340 GO:0003677
Mtr2g3218 810 Gene3D - 332 404 - -
Mtr2g3218 810 Gene3D - 678 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3218 Mtr-Chr2 46086866 46091841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3218 50 810 B3 DNA Binding Superfamily AT5G60450 58.908 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g3218 B3 9.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3218 - - gmx:100812909 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3218 2 46086866 46091841 Mtr4g1761 4 30443530 30449590 PCT