Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3198 ATGTCGAGCGCAAAGAAAGGCCGAGGTCGCCAAAAGATCGAAATGAAAAAGATGAGCAACGAGAGCCACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCAACTAGTGGAAAGGTATTTTCCTTTGGTCATCCTAATCTTGATACGGTCATAGACCGCTATCTTTCTCTCGTCCCACCCCAAAACAACGACACCGTGCAATTCATTGAGGCTCACCGCAACGCCAACGTGCGTGAACTCAATGCTCAGCTGACTCAAATCAACAGCACACTGGAGGCTGAGAAGAAGATTGGTGATGAGCTGAGCAATTTGCACAAGGAAACCCAGGCTAAGTTTTGGTGGGCTTGTCCGGCTGATGGTATGAATAGGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTACTATTCAAACTCTTCCATTTTTTGTTGGCAACGCTTCATCCTCGAACATTTATCTCCATCATCAGCCAATTCCTCAACAAGCTCAAATGTTTCCACCACAAATTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATTGATGATGCCTCACCATGGCTTCAATAATATGGTGTAA 687 0.4483 MSSAKKGRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADAALVVFSTSGKVFSFGHPNLDTVIDRYLSLVPPQNNDTVQFIEAHRNANVRELNAQLTQINSTLEAEKKIGDELSNLHKETQAKFWWACPADGMNRDQLELFKKALEELKKLVIQHATIQTLPFFVGNASSSNIYLHHQPIPQQAQMFPPQIFQNPMLQLQPHLFDGLMMPHHGFNNMV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3198 228 Coils Coil 96 119 - -
Mtr2g3198 228 MobiDBLite consensus disorder prediction 1 20 - -
Mtr2g3198 228 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Mtr2g3198 228 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr2g3198 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr2g3198 228 PANTHER MADS BOX PROTEIN 7 165 - -
Mtr2g3198 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 165 - -
Mtr2g3198 228 Gene3D - 88 170 - -
Mtr2g3198 228 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3198 Mtr-Chr2 45812326 45813453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3198 4 181 Type I MADS-box Gene Family AT5G60440 54.595 5.27e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g3198 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3198 - - gmx:100780445 271.937