Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3193 ATGTTAGATCTTAATCTGAATGAAGATTACGAAGACTCGATCATGCTGGTGGAAAAACTTCCAGAAGCTTCATCAGGAACTTCGAATTCATCCATAGTGAATGCAGAGGCTTCAAGTAACATCACCGGTGATGAAGACTCGTGTTCAACACGCGCTGGTGGTGTTTTCACTTTCAACTTCGGTATCCTGAAGGTGGAAGGAGGGAACGATGATGTTGTTGTTCCGACAAAGGAGTTTTTTCCGGTGAGTGCCGGAACTTCAACGATGATGATTCCGGCAAGGAAGAGCGCGATGGATCTTACAATGGATCGTCGTCTTGGCGGTGAAAATGGAGTTGTTGAAGTTCAGCAGAAGCCTCAGGCGAAGAAGAGTAGGAGAGGTCCAAGGTCGAGGAGTTCGCAGTACAGAGGAGTCACGTTTTATCGGAGAACTGGAAGATGGGAATCACATATCTGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTCGTGCACATTCTCCGTCGCCACAGTAACGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTAGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCTGTGACTAACTTCGAGCCAAGTACATATGAAAATGAGATGAAACCGGGAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTGGGCATGGCGACTCCAGGACATGAACCCAAAGAAAACAAAGGATATTGTCAATTTCAGACCGTCCCTTCTTACAACATGCATCCTGGAAGGAATTTAAAGATGGAGACTAATGTTAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGCTGGTTGTAACTGAACAGCGTCCTCCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATCAGCAGGAAAGGGCAGAGAGAATTGGCATTGATCCTTCAAAAGGACACCCCAACTGGGGGTGGCAAGGGCATAATCAAGGCACTGTTTCCCCAGTACCACAATTCTCTTCTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCACCAAATGCAATCTTTCAAACACAACCAATCAACTCAATTCCCCAGTCACTCTGTTTCACTCCTGGTAGCAATGCATCATCTCAATACTATTACCAGGTTAAGTCCTCACAGGCACCACCATAG 1407 0.4456 MLDLNLNEDYEDSIMLVEKLPEASSGTSNSSIVNAEASSNITGDEDSCSTRAGGVFTFNFGILKVEGGNDDVVVPTKEFFPVSAGTSTMMIPARKSAMDLTMDRRLGGENGVVEVQQKPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFEPSTYENEMKPGAINEGGSHNLDLNLGMATPGHEPKENKGYCQFQTVPSYNMHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPPMWNATFSSFFPNQQERAERIGIDPSKGHPNWGWQGHNQGTVSPVPQFSSAASSGFSISATFPPNAIFQTQPINSIPQSLCFTPGSNASSQYYYQVKSSQAPP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3193 468 SMART rav1_2 134 196 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 SMART rav1_2 226 289 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700|GO:0006355
Mtr2g3193 468 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700|GO:0006355
Mtr2g3193 468 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 MobiDBLite consensus disorder prediction 116 135 - -
Mtr2g3193 468 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Mtr2g3193 468 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 439 - -
Mtr2g3193 468 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 Pfam AP2 domain 225 275 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 439 - -
Mtr2g3193 468 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 SUPERFAMILY DNA-binding domain 225 284 IPR016177 GO:0003677
Mtr2g3193 468 CDD AP2 225 285 IPR001471 GO:0003700|GO:0006355
Mtr2g3193 468 CDD AP2 134 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3193 Mtr-Chr2 45750382 45754519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3193 1 468 AP2-EREBP Transcription Factor Family AT5G60120 43.053 5.24e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr2g3193 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3193 K09284 - gmx:100777102 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3193 2 45750382 45754519 Mtr4g1789 4 30823487 30827550 PCT