Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3123 ATGGCGTTGTTATTCAAGGATCCGGCGAAGATCTCGGCATACAGAGATAGAAGATTCCCTGGAAATCAAGAAGAATTTGAGCATGCGCTTAAAACTTCAACCACCGTTTACGTTGGGAACATGTCGTTTTACACTACGGAAGAGCAAATTTACGAGCTTTTTACACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACCAAAACTCCATGTGGCTTTTGCTTCGTTTTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGTGGGACTATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGATGGAAGACAGTGGGGTCGCGGTCGTAGTGGCGGCCAGGTGCGTGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGATATGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCATCTTGTAGACTACGGCACTGGTTCTTTGGGATCTTTTCCGCCAGTTATTCCATCTTCGTATGGTAGACATGGTGGTGGCCATGGTCACGGTGGTTCCTATAGGCATGGCAGAGGAGATTATCAAAGGAAGAGATACAGAGACGATGACCGCTACACACATGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGAAGGAACTCTGACCATAAGAACTCTGACCATGAATCTAGACCAGAAAAAAATCCACGGTTTCGGGAGAGTGGTGATTCTGATGATGAGGAGGAAGATGATCGTAAAAGACGGGGTTAA 780 0.4436 MALLFKDPAKISAYRDRRFPGNQEEFEHALKTSTTVYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGGSYRHGRGDYQRKRYRDDDRYTHEPSKRTSDHESRRNSDHKNSDHESRPEKNPRFRESGDSDDEEEDDRKRRG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3123 259 MobiDBLite consensus disorder prediction 188 259 - -
Mtr2g3123 259 CDD RRM_NCBP2 36 113 IPR034148 -
Mtr2g3123 259 Gene3D - 6 150 IPR012677 -
Mtr2g3123 259 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 212 IPR027157 GO:0000339|GO:0005846|GO:0045292
Mtr2g3123 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Mtr2g3123 259 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Mtr2g3123 259 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 212 - -
Mtr2g3123 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Mtr2g3123 259 SMART rrm1_1 35 108 IPR000504 GO:0003723
Mtr2g3123 259 MobiDBLite consensus disorder prediction 163 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3123 Mtr-Chr2 44911932 44916992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3123 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 2.04e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3123 K12883 - gmx:100789535 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3123 2 44911932 44916992 Mtr2g3123 2 44911932 44916992 ECH