Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3115 ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATTGACATCCCTCCAAGAAAGCTCCTCACCCGCCGCAACACCACCGCTGCCGTCGACATCTTCTCCGACGACACCATCCTCCAAAAATTCCTCCCACACAATGACTCTGACTCAGACTCCGACGATCCTTACTCTTCCGACCATTTTCGCATGTATGAATTCAAAGTCCGCCGCTGCACTCGTAGCCGGAGCCACGACTGGACTGACTGTCCATTCGCTCACCCCGGTGAGAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGCGGTGATACTTGTGAATTCGCTCATGGCGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCAGTTACATCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGTGGTAATGGTAACGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCACCTCCGGCATCACCACCTATGTCTCCGATGAAGCCACGAAACGGTGTTTCATCGCTTTCACGCTACGGTTCTTCAATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGACGGTTCATCTTCTGCTTCTTCTTCTTCACCTGTTTCTGTTTCTGCTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCAGAGGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCTTCTTCATTTGATCATCAACAACATTTCAATATTCTTTCACAATCCATTCATCAGAATTTGACACCAAGTTTCAATGATGTTGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAATAACGACAACCTTAATAAGGTTGTTGGTGGTGGTGACGTCAATGGTTTGTCTTGTCCTGCCCCTGATCTCGGATGGGTTAATGAACTGCTGATGTAG 1248 0.4247 MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTAAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGGNGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVSSLSRYGSSINSNNLRYRDMLIDLLGSFEGMNFNDGSSSASSSSPVSVSAAKALQIQNMGYLESLDVPEEQNQQQFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNNDNLNKVVGGGDVNGLSCPAPDLGWVNELLM* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3115 415 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Mtr2g3115 415 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 29 414 - -
Mtr2g3115 415 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Mtr2g3115 415 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Mtr2g3115 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Mtr2g3115 415 Gene3D - 117 180 - -
Mtr2g3115 415 PANTHER UNKEMPT FAMILY MEMBER 29 414 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3115 Mtr-Chr2 44850970 44852589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3115 70 179 C2H2 Transcription Factor Family AT5G07500 68.182 3.09e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr2g3115 zf-CCCH 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3115 K23047 - gmx:100801371 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3115 2 44850970 44852589 Mtr2g3115 2 44850970 44852589 ECH