Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3114 ATGCCAGCCCAGAAGCGTTCCTTACCCGAGTCAATGGAAGATGAAGAAGAAACTTCGCAGCTTCTTCAACAATCTCGCCATGTCAAGCATCACCGCGAACCACACTTCATCGACCAACTCGAACAAGAGGAAGATGAAGAAGACGACGATGATGATCAACAAGAGCAAGATGAGGAAGAAGAGGAGCAAGGAGAAGAAGAGGAAGATGATGAAGAAGAAGCTGAAGAAGATGATGATGAAGATGACGATGAAGAAGGGCAGCACCATGACGATGAAAAGGAAAAATCACAAGATTCTGATGAATCCTCTGACTCTGAAGAAAAACCTGAATATGTGTACGTTGAACTTTCGGATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCTAGCCGTCGCTCCTTGAGAGATGATCCAAATTATGATGCCCTTATTGCTACTCTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTTTTTAAACGGCAATCTGAAGCACTAAGCAAGAAACGTAAAGATACACCAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAACCAAGCTAGTGATATTCAAGGATCTGAAGAAAATGAGGAAAATGGAAATAATGAAAGAGACTCATCTTCCGGTGATGAGGGGGGTACAGAACTCCGACAGAGAAAACGAAAGAGATGGACCAGAGTTCGCTCCTCTCAGCCCTCATCGTCAATGGCAAGTCCTGATGGTGGAAGCATAGAAAGTGATCTGGATATAAATAGAGAAAATCGAGGAACTTCTAGGCTGGTGACAAAAGCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGCAGTGGTGGTGGTAGCAACGGCAAGAGTTCCCGTAGTGGTCGAATGTCTAGGTTGGTTGATTATCTCAAAAACTTGAATGAGAACACTGATGAGTTTGATGTTCATCTCATGTTTGTTTCTCTGGACAAAGAAACTACACAAAGGTTGGAGAAGCTTCATCTGTGTTGTCGACCAAATGTGTCTGTCAAGAACCTTTATGAATATATTGCTAGTCAGACTCCTTTGACAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTGCAAATTGTGACAAGTCAGCTGATGAGGATTCAGTCCTGGATTTTGATGAGCTATCATCGTTGGTTATAGATCCACAAAAAGATGAACTGGAAATTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATTTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTGA 1515 0.4211 MPAQKRSLPESMEDEEETSQLLQQSRHVKHHREPHFIDQLEQEEDEEDDDDDQQEQDEEEEEQGEEEEDDEEEAEEDDDEDDDEEGQHHDDEKEKSQDSDESSDSEEKPEYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQSEALSKKRKDTPSSSSFVTRSQRNQRNLQSRRQNQASDIQGSEENEENGNNERDSSSGDEGGTELRQRKRKRWTRVRSSQPSSSMASPDGGSIESDLDINRENRGTSRLVTKARKLTWGRGGFRSNTRYGSGGGSNGKSSRSGRMSRLVDYLKNLNENTDEFDVHLMFVSLDKETTQRLEKLHLCCRPNVSVKNLYEYIASQTPLTVEEVEILAVKGCSSANCDKSADEDSVLDFDELSSLVIDPQKDELEILQAHETVAEIRSKSIFKRGHLILAYKRKV* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3114 504 MobiDBLite consensus disorder prediction 8 39 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 318 332 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 223 366 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 269 290 - -
Mtr2g3114 504 Coils Coil 191 214 - -
Mtr2g3114 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 195 IPR013083 -
Mtr2g3114 504 ProSitePatterns Zinc finger RING-type signature. 141 150 IPR017907 -
Mtr2g3114 504 Coils Coil 37 77 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 351 366 - -
Mtr2g3114 504 Pfam Zinc finger, C3HC4 type (RING finger) 124 164 - -
Mtr2g3114 504 ProSiteProfiles Zinc finger RING-type profile. 125 165 IPR001841 -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 40 87 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 1 110 - -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 88 110 - -
Mtr2g3114 504 CDD RING-HC_RING1_like 125 165 - -
Mtr2g3114 504 PANTHER OS11G0578200 PROTEIN 1 503 IPR044592 -
Mtr2g3114 504 MobiDBLite consensus disorder prediction 233 267 - -
Mtr2g3114 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 503 - -
Mtr2g3114 504 SUPERFAMILY RING/U-box 111 179 - -
Mtr2g3114 504 SMART ring_2 125 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3114 Mtr-Chr2 44835305 44841117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3114 123 294 C3H Transcription Factor Family AT2G30580 26.486 8.95e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3114 K10695 - gmx:100776547 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3114 2 44835305 44841117 Mtr2g3114 2 44835305 44841117 ECH