Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3102 ATGGATCAAAATCAACAAGGAGGTCGACCTTCTTCTTCAACCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAACCAAATGAAGATCCTCTTTTCTAACCTCAACTCTCTTCTCCCTAGCTATAATCCAAAGGAATTAGCATTACCATTACCTGATCAAGTAGATGAGGCTATAAACTACATAAAGAGGCTAGAGACAAATATAAAGTTGGCAAAGGAGAAAAAAGAAAGTTTAATGGGAAACAAGAGATCACGTGGTGACTGCTCAAGTTCTTCTGGGGCAAAAGGAATCATAAAGTTGCCAAAAATAGAGATCCATGAAATGGGACCCACTCTACAAATAATTGTAACATGTGGGGTTGATGAACATTTTATTTTCTGTGAAATTATGAGAATACTGCATGAAGAGAACGTTGAGGTTATTTCTTCAAATACTTCTTTGACTGGCCATTCACTTCTTCATACCGTACATGCTCAGATACCACAATCTTTGTTGCAATTTGGAGAAACCAAAATAAGTGAGAGATTGAAAGCATTTGTGAACGGATCTGTGAGTGATGTGGAAACAGAGCCTCTATTGTGGGATCTTGAAATTGGAAGTGAGAGTTGGGAGCTTCTACATTCTGTAGTAACCAAGAGTTTACCAAATCCTTGA 660 0.3742 MDQNQQGGRPSSSTKVERKIVEKNRRNQMKILFSNLNSLLPSYNPKELALPLPDQVDEAINYIKRLETNIKLAKEKKESLMGNKRSRGDCSSSSGAKGIIKLPKIEIHEMGPTLQIIVTCGVDEHFIFCEIMRILHEENVEVISSNTSLTGHSLLHTVHAQIPQSLLQFGETKISERLKAFVNGSVSDVETEPLLWDLEIGSESWELLHSVVTKSLPNP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3102 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Mtr2g3102 219 Pfam Helix-loop-helix DNA-binding domain 15 67 IPR011598 GO:0046983
Mtr2g3102 219 Gene3D - 7 90 IPR036638 GO:0046983
Mtr2g3102 219 Coils Coil 56 83 - -
Mtr2g3102 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 189 IPR015660 GO:0003700|GO:0006357
Mtr2g3102 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 189 - -
Mtr2g3102 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3102 Mtr-Chr2 44723136 44725540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3102 13 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.331 5.94e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3102 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3102 - - mtr:MTR_2g090425 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3102 2 44723136 44725540 Mtr4g2456 4 38169571 38170700 PCT