Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3100 ATGGATCATAATCAACAAGGAGGTCAACCTTCTTCTTCAACCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAACCAAATGAAGATCCTCTTTTCTAACCTCAACTCTATTCTCCCTAGCTATAATCCAAAGGAATTAGCGTTACCATTACCTGATCAAGTAGATGAGGCTATAAACTACATAAAGAGCCTAGAGACAAATCTAAAGGGTGCAAAGGAGAAGAAAGAAAGTTTAATGGGAAACAAGAAGAGATCACGTGGTGGTTATGGAGCAAAAGGAAGCATAATAAAGTTGCCAAAAATAGAAATTCATGAAATGGGATCCACTCTACAAGTGATTGTAACATGTGGGGTTGATGAACATTTTATTTTCTGTGAAATTATGAGAATACTGCATGAAGAGAACGTTGAGGTTATTTCTTCAAATTCTTCTTTAACTGGTGATTCACTTCTTCATACCGTGCATGCCCAGATTCCGCAAACTTTGTTACAATTTGGAGCAATGAAAATAAGTCAGAGATTGAAAGCATTTGTGAATGGATCGATGAGCGATGTGGAAACAGGGCCTTTATTGTGGGATCTTGAAATTGGAAGTGAGAGTTGGGAGCTTCTAGATTCTATAGTAACCATGAGTTTACCAAATCCTTGA 654 0.37 MDHNQQGGQPSSSTKVERKIVEKNRRNQMKILFSNLNSILPSYNPKELALPLPDQVDEAINYIKSLETNLKGAKEKKESLMGNKKRSRGGYGAKGSIIKLPKIEIHEMGSTLQVIVTCGVDEHFIFCEIMRILHEENVEVISSNSSLTGDSLLHTVHAQIPQTLLQFGAMKISQRLKAFVNGSMSDVETGPLLWDLEIGSESWELLDSIVTMSLPNP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3100 217 Gene3D - 8 89 IPR036638 GO:0046983
Mtr2g3100 217 Coils Coil 56 83 - -
Mtr2g3100 217 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 187 - -
Mtr2g3100 217 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 187 IPR015660 GO:0003700|GO:0006357
Mtr2g3100 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Mtr2g3100 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 82 IPR036638 GO:0046983
Mtr2g3100 217 Pfam Helix-loop-helix DNA-binding domain 15 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3100 Mtr-Chr2 44697027 44699416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3100 13 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.674 8.28e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3100 HLH 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3100 - - mtr:MTR_2g090425 333.954