Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3099 ATGGATCAAAATCAACAAGGAGGTCGACCTTCTTCTTCAACCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAACCAAATGAAGATCCTCTTTTCTAAACTCAACTCTCTTCTCCCTAGCTATAATCAAAAGGAATTAGCGTTACCGTTACCTGATCAAGTAGATGAGGCTATAAACTATATAAAGAGCCTAGAGATAAATATAAAGTTGGCAAAGGAGAAGAAAGAAAGTTTAATGGGAAACAAGAAGAGATCACGTGGTGGCTGGTCGAGTTCTTATGGAGCGAAAGGAAGCATAGAGTTGCCAAAAATAGAGATTCATGAAATAGGACCCACTCTACAAGTGATTGTAACATGTGGGGTTGATGAACATTTTATTTTCTGTGAAATTATGAGAATACTGCATGAAGAGAACGTCGATGTTATCTCTTCAAATTCTTCTTTGGCCGGTGATTCACTTCTTCATACTGTGCTTGCTCAGATTCCACAATCTTTGTTACAATTTGGAGAAACCAAAATAAGCAAGAGATTGAAAGCGTTTGTGGACGGATCCATGAGCGATGTGGAAACAGATCCTCAATTGTGGGATCTTGAAATTGGAAGTGAGACTTGGGAGCTTCTACATTCTCAACAAGATCCTGCGGCCAACAACATCAGCCAAAACAGACCTAATCATACTGCAAGAAATTGCTTCAAAATCAAGGGTTATCCTAAGAGAAATGGAGGCAAAACAGAAGCTAACACAGCTGCTCGCCAATATGCACCACATCATCCTAACTGGATCATTGACAGAGGGGCATCTCATCACATTGCTCAAGATTTTTAG 831 0.3935 MDQNQQGGRPSSSTKVERKIVEKNRRNQMKILFSKLNSLLPSYNQKELALPLPDQVDEAINYIKSLEINIKLAKEKKESLMGNKKRSRGGWSSSYGAKGSIELPKIEIHEIGPTLQVIVTCGVDEHFIFCEIMRILHEENVDVISSNSSLAGDSLLHTVLAQIPQSLLQFGETKISKRLKAFVDGSMSDVETDPQLWDLEIGSETWELLHSQQDPAANNISQNRPNHTARNCFKIKGYPKRNGGKTEANTAARQYAPHHPNWIIDRGASHHIAQDF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3099 276 Gene3D - 8 90 IPR036638 GO:0046983
Mtr2g3099 276 Coils Coil 56 83 - -
Mtr2g3099 276 Pfam Helix-loop-helix DNA-binding domain 15 67 IPR011598 GO:0046983
Mtr2g3099 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 83 IPR036638 GO:0046983
Mtr2g3099 276 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 190 - -
Mtr2g3099 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Mtr2g3099 276 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 190 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3099 Mtr-Chr2 44677668 44683231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3099 13 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.464 9.92e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3099 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3099 - - mtr:MTR_2g090425 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3099 2 44677668 44683231 Mtr2g3099 2 44677668 44683231 ECH