Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3090 ATGTACTTGAGAGGTAGAATGTACAAAGTTCACTGGGTCTCCATAGGGGATGGTCAAGGCAGCAGCTCTCCCTTTCTCAGAAACAGAATGCGCCGCAGCAACCTACAGTACGTAATGGGGACAACAAGGCAAGGGAAAAGGAACAAATACACAATCAGAGGCACCGACACGGTCGTTAGAGCTAAAGACTGTGTTTTGCTACGCCGTACTGACGCGATCAAACCAATCATAGCCCGCGTGGAAAAGTTTGAGCAGGATAATATGAACAGAATGAGGGTCTATGTCAGAAAATATTATCGACCCGAGGAAACCATTGAAGGACGCGTATGTTTTCATGGAGATAAGGAGCTGTTTTTGTCTAATCATTATGATGTTCATAGTGCTGACACAATTGAAGGGAAGTGTTTTGTGCACAATTTGAAGAACTACATGAAGCTTGAAGTTGTAGGTGCTAACGATTACTATAGCAGGTTCTGGTACAATGCTTTTACTGGGGCTATGACACCTGAACGCGTTGAAGTGTTATGCAAATGTGAGATGCCTTATAACCCGGATAGGTTAATGGTGCTGTGTGGAAGTTGCAATGAAAGGTACCATCCTAAATGCGTGGGCATGCCTTTTGAAGAAGCAATGAAATCTGAAGATTTTAGATTTGTTTGTTCAAAATGTTCACCTGATTTAAAGGATTAG 690 0.4261 MYLRGRMYKVHWVSIGDGQGSSSPFLRNRMRRSNLQYVMGTTRQGKRNKYTIRGTDTVVRAKDCVLLRRTDAIKPIIARVEKFEQDNMNRMRVYVRKYYRPEETIEGRVCFHGDKELFLSNHYDVHSADTIEGKCFVHNLKNYMKLEVVGANDYYSRFWYNAFTGAMTPERVEVLCKCEMPYNPDRLMVLCGSCNERYHPKCVGMPFEEAMKSEDFRFVCSKCSPDLKD* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3090 229 ProSitePatterns Zinc finger PHD-type signature. 176 223 IPR019786 -
Mtr2g3090 229 ProSiteProfiles Zinc finger PHD-type profile. 173 226 IPR019787 -
Mtr2g3090 229 PANTHER OS08G0421900 PROTEIN 46 228 - -
Mtr2g3090 229 ProSiteProfiles BAH domain profile. 57 171 IPR001025 GO:0003682
Mtr2g3090 229 Pfam BAH domain 59 162 IPR001025 GO:0003682
Mtr2g3090 229 SMART BAH_4 57 171 IPR001025 GO:0003682
Mtr2g3090 229 Pfam PHD-finger 176 225 IPR019787 -
Mtr2g3090 229 Gene3D - 27 168 IPR043151 -
Mtr2g3090 229 PANTHER CHROMATIN REMODELING PROTEIN EBS 46 228 - -
Mtr2g3090 229 SUPERFAMILY FYVE/PHD zinc finger 168 226 IPR011011 -
Mtr2g3090 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 229 IPR013083 -
Mtr2g3090 229 SMART PHD_3 175 224 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3090 Mtr-Chr2 44587706 44591879 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr2g3090 BAH 6.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3090 K25868 - mtr:MTR_2g090365 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3090 2 44587706 44591879 Mtr2g3090 2 44587706 44591879 ECH