Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3085 ATGCACCATATGCTAGTGTTAATGGACATTCTGTCGAACCGGGCCAAAGCTGATGCTAATGCTAATGCAGATTCTAATAAAATCTGTTCTAATGATTTTGAATGCAACATATGTTTGGAGCATGTAAAAGATCCAGTGGTAACACTTTGTGGTCATCTCTATTGTTGGCCTTGTATTTACAAATGGATCAATAGCACCTCATGGGAACATAATGAGAAACCAGAATGTCCAATATGCAAATCAGAAATTTCAGAATCAACTCTTGTTCCATTATATGGTCGTGGCAAAACCACATCAAGTTCTGAAGGTGAGGCTCATCAAGATGGGGTTGTTGTACCACCAAGACCACTTGGTCCAAGATCACTTGATACTGCAACTGTTTCACAACCTGAACTAGAACAAGCAGAAGCAGAAGCAGAAGCACCACCAGCACAGGAGAGTAGTTTGCACATTTGCTTACAATATGGCCCATATAAGCTTGATTTCCGGAAATTTGATTGA 501 0.4012 MHHMLVLMDILSNRAKADANANADSNKICSNDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVPLYGRGKTTSSSEGEAHQDGVVVPPRPLGPRSLDTATVSQPELEQAEAEAEAPPAQESSLHICLQYGPYKLDFRKFD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3085 166 SUPERFAMILY RING/U-box 30 92 - -
Mtr2g3085 166 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mtr2g3085 166 ProSiteProfiles Zinc finger RING-type profile. 35 80 IPR001841 -
Mtr2g3085 166 MobiDBLite consensus disorder prediction 94 145 - -
Mtr2g3085 166 CDD RING-HC_AtRMA_like 33 81 - -
Mtr2g3085 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 109 IPR013083 -
Mtr2g3085 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 16 131 - -
Mtr2g3085 166 Pfam Zinc finger, C3HC4 type (RING finger) 35 79 IPR018957 GO:0046872
Mtr2g3085 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 131 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr2g3085 166 SMART ring_2 35 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3085 Mtr-Chr2 44534053 44536004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3085 30 138 C3H Transcription Factor Family AT4G28270 48.305 1.73e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3085 K10666 - gmx:100780643 155.221