Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3084 ATGGCCTTCAATCAATATTTTGAGGAGGGTATGAACCAAATTGATTCCTTGGAAGAAAAATCATCTCAAGAAATGTGGAAATGTGCAAGTGCTGAAGCAATTTCTGGTTCTAGTGGCTTTGACTGCAACATATGCTTGGAGTGTGTCCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGTATTTACAAATGGCTTAATTTCCATGCCGAAAATCAAGAGAAGCAGAAGGAAGAGCCACAATGTCCAGTATGCAAATCAGAAATCTCAAAATCATCTCTTGTTCCGCTCTACGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGATCACCAAATAGGGAGTGTCATACCACCTAGACCGCTTGGTCCTTCATGGATGACGAACTTGCCAAGATCACTTGATGCTGCAAATGTTTCACAACATAATTCTCGGACTTATCATCCCCATTATCTGAACCATTCTCAACGATACGCTTCGCCAATGCTTAACACAGGTGGTTCACTGCCCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAAATGATATATGCAAGGATCTTTGGAAACCAAGTGACAAACATATATACATACCCAAATTCATACAATCTTACGGGGATCAGTAATCCAAGGATCAGAAGGCATTTGATGCGAGCTGATAAATCGCTCGGTAGAATCTGTTTCTTCCTCCTTTGTTGCACAGTTTTGTGTCTTCTCCTATTTTGA 744 0.4234 MAFNQYFEEGMNQIDSLEEKSSQEMWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHAENQEKQKEEPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNDHQIGSVIPPRPLGPSWMTNLPRSLDAANVSQHNSRTYHPHYLNHSQRYASPMLNTGGSLPNPLDTSYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGISNPRIRRHLMRADKSLGRICFFLLCCTVLCLLLF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3084 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Mtr2g3084 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr2g3084 247 MobiDBLite consensus disorder prediction 100 115 - -
Mtr2g3084 247 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Mtr2g3084 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 247 - -
Mtr2g3084 247 MobiDBLite consensus disorder prediction 100 120 - -
Mtr2g3084 247 CDD RING-HC_AtRMA_like 40 91 - -
Mtr2g3084 247 Pfam RING-type zinc-finger 42 87 IPR027370 -
Mtr2g3084 247 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Mtr2g3084 247 SMART ring_2 42 89 IPR001841 -
Mtr2g3084 247 SUPERFAMILY RING/U-box 38 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3084 Mtr-Chr2 44502801 44505611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3084 34 247 C3H Transcription Factor Family AT4G28270 40.991 1.75e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3084 K10666 - gmx:100785491 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3084 2 44502801 44505611 Mtr2g3084 2 44502801 44505611 ECH