Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3080 ATGAAGCACCACCGTGTCTCCGTCTTGTTTCTTTTAAGCTTATGCTTCATACTTGCTCGGGGGCAGTCTAAGCACAGTGTACACTTCGACCCACATTGGCACCCGGGAACCGCCACCTGGTACGGCGAGGCTGAAGGAGACGGTAGCAGAGGAGGGGCTTGTGGGTACGGAAGTTTGGTGGATGTGAAGCCGTTAAGGGCAAGAGTAGGGGCAGTGGGGCCAGTGTTGTATAAGAAGGGAGAAGGGTGTGGAGAGTGTTATAAGGTCAAGTGTTTAGACCATACTATATGCTCAAAACGGGCAGTGACGGTTATAATAACTGATGAATGCCCTGGCTGCCCTTCTGACCGAACACATTTTGACCTTAGTGGTGCTGCTTTTGGCCACATGGCTGTTCATGGTGAGAATGGTCAACTCAGAAATAGAGGTGAAATCCAAGTTCTTTATAGAAGAACAACATGTGTATATGCTGGCAAAAATATTGCCTTTCAAGTTAATGAAGGCTCCACACCATTTTGGTTGTCACTTCTAGTGGAGTTTGAAGATGGAGATGGTGACATAAGCTCCATGCATATACAAGAAGCTGGATCTAGTGAGTGGCTACAAATGAATCATCTATGGGGTGCAAATTGGAACATTGTTACAGGACCTTTGAGAGGACCTTTCTCTGTGAAATTAAGCACGTCAACGGGAAAAAGCCTCACTGCTAAAGATGTCATTCCAAGTCATTGGTCTCCAAAATCCACTTATACCTCTCGCCTAAATTTCTCTCCTTGA 777 0.4607 MKHHRVSVLFLLSLCFILARGQSKHSVHFDPHWHPGTATWYGEAEGDGSRGGACGYGSLVDVKPLRARVGAVGPVLYKKGEGCGECYKVKCLDHTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVHGENGQLRNRGEIQVLYRRTTCVYAGKNIAFQVNEGSTPFWLSLLVEFEDGDGDISSMHIQEAGSSEWLQMNHLWGANWNIVTGPLRGPFSVKLSTSTGKSLTAKDVIPSHWSPKSTYTSRLNFSP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3080 258 Gene3D - 156 257 IPR036749 -
Mtr2g3080 258 Pfam Expansin C-terminal domain 161 241 IPR007117 -
Mtr2g3080 258 PANTHER EXPANSIN-B3 14 258 - -
Mtr2g3080 258 Pfam Lytic transglycolase 74 149 IPR009009 -
Mtr2g3080 258 Gene3D - 18 154 IPR036908 -
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Mtr2g3080 258 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Mtr2g3080 258 SMART dpbb_1 69 149 IPR007112 -
Mtr2g3080 258 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Mtr2g3080 258 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Mtr2g3080 258 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Mtr2g3080 258 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Mtr2g3080 258 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Mtr2g3080 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 159 IPR007112 -
Mtr2g3080 258 PANTHER EXPANSIN-LIKE PROTEIN B1 14 258 - -
Mtr2g3080 258 SUPERFAMILY Barwin-like endoglucanases 29 158 IPR036908 -
Mtr2g3080 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Mtr2g3080 258 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3080 Mtr-Chr2 44472417 44475192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3080 33 194 Expansin Gene Family AT2G20750 72.121 4.00e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3080 K20628 - gmx:100780112 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3080 2 44472417 44475192 Mtr2g3080 2 44472417 44475192 ECH