Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3079 ATGGGTGTTCTACAATCTATATTTCTCTACCTGGTTTTACTACAAGCATGCATCAAGGTTTCTTCTTACAGAGATGAAGAGTGGAAGTCTGCAACTGCAACATACATCCAAGATAAAGATGGGTCTCTCATTACAGAAGGAGCTTGTGGTTATGGAGACATTCACAAGGTTGATTATGGGAAATATAGTACTGGGTTAAGCACAATTTTGTTCAACAAAGGGAGTACTTGTGGTGCCTGTTATGAGATTAGATGTGTTGATCACATTTTATGGTGCTTGATTGGAAGTCCTTCTGTCGTTGTTACTGTTACAGATTTCTGTGCTCCAAACTATGGACTTTCATCTGATTATGGTGGATGGTGCAACTTTCCAAGTGAGCATTTTGAGATGTCAGAAGCTGCATTCGCTGAAATTGCCAAGAGAAAATCTGATATAGTTCCAATTCAATATAGGAGGGTTAAATGCAAAAGAACTGGTGGCTTGAAATTCACAATGAGTGGAAGTTATAATTTTTATCAAGTTCTTATTACCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAACAAAAACTGGCTGGATACCAATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAACCTTCAAAAACAACCTTTATCCTTTGAGGTTACCATCACAAGTGGAAAAACAATCACATCTTACAATGTAGCTCCTGCAAATTGGCAATTTGGACAAACATTTGAAGGAAAACAATTCTAG 759 0.3847 MGVLQSIFLYLVLLQACIKVSSYRDEEWKSATATYIQDKDGSLITEGACGYGDIHKVDYGKYSTGLSTILFNKGSTCGACYEIRCVDHILWCLIGSPSVVVTVTDFCAPNYGLSSDYGGWCNFPSEHFEMSEAAFAEIAKRKSDIVPIQYRRVKCKRTGGLKFTMSGSYNFYQVLITNVGLDGEVVAVKVKGTKTGWIPMARNWGQNWHCNVNLQKQPLSFEVTITSGKTITSYNVAPANWQFGQTFEGKQF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3079 252 PANTHER EXPANSIN-A15 3 252 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Mtr2g3079 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Mtr2g3079 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Mtr2g3079 252 SMART dpbb_1 63 150 IPR007112 -
Mtr2g3079 252 Gene3D - 13 156 IPR036908 -
Mtr2g3079 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Mtr2g3079 252 Pfam Expansin C-terminal domain 162 238 IPR007117 -
Mtr2g3079 252 PANTHER EXPANSIN-A20 3 252 - -
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Mtr2g3079 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Mtr2g3079 252 SUPERFAMILY Barwin-like endoglucanases 11 178 IPR036908 -
Mtr2g3079 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Mtr2g3079 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Mtr2g3079 252 Gene3D - 160 252 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3079 Mtr-Chr2 44463632 44465911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3079 4 252 Expansin Gene Family AT4G38210 62.550 3.41e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3079 - - gmx:100809013 444.121