Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3064 ATGGTAGTAATCGAAGATCGAAACGAAATTCCCTCCACCGCAGCTTCAACCAACGACGTTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGGCAGTGACGTCGACGCCAATGACGGCGGCGGAGCAATCAAACACGAGGAAGAAGATCATCGTGATCAGCAAAGCCACCAACAGACAGAGCAAGAGAATGAGAAGGAACAGGAGCAGAGAGATTCTCAGAGAATCATTTCCTCTGATGATGCTTCCATTGACGATGAGGAACTGAAACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTAGATGCAAAGTATGAGGAGGCATTAACACAATATGAACTTGCTTTAGAAGTTGCGCCAGACATGCCTTCCTCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGAGTGTGCTTTCTGAAAATGGGAAAATATGAAAACACAGTTAAAGAATGCACCAAAGCGTTAGAATTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAGCTATTCGACGGTTAGAGCCTCTTGCTGCGGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTATTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACAGTAA 813 0.4379 MVVIEDRNEIPSTAASTNDVSDGFETASDTDLGSDVDANDGGGAIKHEEEDHRDQQSHQQTEQENEKEQEQRDSQRIISSDDASIDDEELKQKALVQANEAKVEGNKLFVDAKYEEALTQYELALEVAPDMPSSVEIRSICHANRGVCFLKMGKYENTVKECTKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3064 270 Gene3D Tetratricopeptide repeat domain 43 237 IPR011990 GO:0005515
Mtr2g3064 270 Coils Coil 53 78 - -
Mtr2g3064 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Mtr2g3064 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 49 270 - -
Mtr2g3064 270 MobiDBLite consensus disorder prediction 1 84 - -
Mtr2g3064 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Mtr2g3064 270 Pfam Tetratricopeptide repeat 141 171 IPR001440 GO:0005515
Mtr2g3064 270 MobiDBLite consensus disorder prediction 10 28 - -
Mtr2g3064 270 MobiDBLite consensus disorder prediction 41 84 - -
Mtr2g3064 270 SUPERFAMILY TPR-like 98 212 IPR011990 GO:0005515
Mtr2g3064 270 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Mtr2g3064 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Mtr2g3064 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Mtr2g3064 270 SMART tpr_5 173 206 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3064 Mtr-Chr2 44324983 44330716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3064 98 240 Calmodulin-binding Proteins AT3G25230 37.086 1.70e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3064 K24926 - gmx:100808386 372.474