Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3020 ATGGTGAGAACCCCTTGTGACAATAATGGATTGAGAAAAGGTTCATGGACACATGAGGAAGACAAAAAGTTGATTGCTTATGTTACTAGGTATGGCTGTTGGAATTGGCGACAACTACCTAGATTTGCAGGGCTTGAAAGGTGTGGTAAGAGTTGTAGACTAAGGTGGATGAACTATCTAAGGCCAGATGTCAAAAGAGGGAACTTCAATCAACAAGAGGAAGAGCTTATCATCAAACTTCATGAAAAACTGGGTAATAGATGGACCGTGATTGCTTCAAATTTTCCAGGGAGAACCGATAATGAGATAAAGAATCACTGGCACACTACCTTGAAGAAGCGTTTTGTAAAGAATATCAAGTCGAAACGTGGAACGAGAATAGCAAAAGATTCAAATTCAAATAATCACCCTACATTGGAAGAACCTAAGAAATTTGAAGTAGTTTTAGAGAGCAACAATGATCCTAATATTGCAAATCAAATATCTCCGCAACCATCTTCAAGCGAATTGTCTTGCATAACAATGGACAATGCAATTCTTGATGATAATGACCTTTCTTTTATGGAAACATACATGGAGAATTTTAGTGAGAATTTCTGGACAGAGCCATATATGATAGACAATTCATATGTCCCCCATAATCACCCTACAATGGAAGAAACCAAGAAACTTGAAGGAGTTTTTGAGAACAATATCGATCCCAATATTACGAGTCCACTATCTTCACAACCATTTTCAAGTGGATTCTCTTGCATAACAACAGAAAATTTCGCTTCCACTATATCACATGAAAATTCAGTTTTTGATGGTAGTGAACTTCCGTTTATGGATGCATTCATGGAGACTGTGAGTGAATTTTTTTGGACAGAGCCATATATGATAGACACTTCCTATTCCCCATATAAGCACCCTACATTGGAAGAAGCCAATAAATTTGAAGGAGTTTTAGAGAACAACAATAATCCTAATACTGCATCTACCACAATATCATATGAGAATCCAATTCTTGATGACAATGACCTTCATTTTATGGATGCATACATAGAGAATTTGAGTGAGAATTTCTGGTCAGAGCCATATATGATTGACAGTTCACATTTCCTTCGTAATCACCTTACAATGGAAGAAGCCAAGAAAATTGAAGGAGTTTTTGAGTACAACATTGATCCCAATAGTGTTAGTCCAGTATCTTCACAACCATCATCAAATGGATTCTCTTCAATAACAATGGAAAATGTTACTTCCACAATATCACATGAAAATCCTTTAATGGATGCATTATTTCCTGCAGAGTGTGAACATGAATACTTTAGTTCTGTGTACGATGTAGAATTTTGGAGCCATACTGCAGAATAA 1356 0.3636 MVRTPCDNNGLRKGSWTHEEDKKLIAYVTRYGCWNWRQLPRFAGLERCGKSCRLRWMNYLRPDVKRGNFNQQEEELIIKLHEKLGNRWTVIASNFPGRTDNEIKNHWHTTLKKRFVKNIKSKRGTRIAKDSNSNNHPTLEEPKKFEVVLESNNDPNIANQISPQPSSSELSCITMDNAILDDNDLSFMETYMENFSENFWTEPYMIDNSYVPHNHPTMEETKKLEGVFENNIDPNITSPLSSQPFSSGFSCITTENFASTISHENSVFDGSELPFMDAFMETVSEFFWTEPYMIDTSYSPYKHPTLEEANKFEGVLENNNNPNTASTTISYENPILDDNDLHFMDAYIENLSENFWSEPYMIDSSHFLRNHLTMEEAKKIEGVFEYNIDPNSVSPVSSQPSSNGFSSITMENVTSTISHENPLMDALFPAECEHEYFSSVYDVEFWSHTAE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3020 451 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mtr2g3020 451 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 239 - -
Mtr2g3020 451 CDD SANT 68 111 IPR001005 -
Mtr2g3020 451 Gene3D - 67 146 - -
Mtr2g3020 451 SMART sant 12 62 IPR001005 -
Mtr2g3020 451 SMART sant 65 113 IPR001005 -
Mtr2g3020 451 CDD SANT 15 60 IPR001005 -
Mtr2g3020 451 Gene3D - 13 65 - -
Mtr2g3020 451 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Mtr2g3020 451 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Mtr2g3020 451 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Mtr2g3020 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Mtr2g3020 451 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mtr2g3020 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Mtr2g3020 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3020 Mtr-Chr2 43883527 43888524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3020 1 209 MYB Transcription Factor Family AT2G31180 47.143 5.64e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g3020 Myb_DNA-binding 4.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3020 K09422 - mtr:MTR_2g089420 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3020 2 43883527 43888524 Mtr2g3020 2 43883527 43888524 ECH
Mtr2g3020 2 43883527 43888524 Mtr4g1339 4 23180051 23181529 PCT