Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3007 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCAACATCCATTTCCTTTCAAAATCCAACACTTTTCAACACACACCAAAACACTCCTCCTCTTCCTGAACCAGAAGAACTCAAAGGTTGTCTTGGAAGCTTAGATGGAGCATGTATTGAAAAGCTCTTACTTCATTGTGCAAGTGCTTTGGAAAGCAATGATATAACCTTAGCTCAACAAGTTATGTGGGTCTTAAACAACGTTGCTTCACCATTAGGTGACACTAACCAAAGACTCACTTCCTGGTTTCTAAGAGCATTAATCTCTAGAGCTTCAAGGATTTGTCCTACTTCAATGAATTTCAAAGGAAGTAACTACACAATTCAAAGAAGATTGATGTCCGTTACCGAACTCGCCGGGTATGTTGATTTAATTCCTTGGCATAGGTTTGGTTTTTGTGCTTCCAACAATGAAATTTTCAAGTCAATTAAGGGATTCAAAAGGGTACATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACCAGAAGGCCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCTATGGTTCCTCCTTTGGTTAACATATCAATACATGAAGTAGGTCAACGTTTAGGTAATTTTGCAAAATTTAAGGATGTCCCTTTTGAGTTTAATGTTATTGGAGACAATGTTTCATTGACTTCTGAAGATTTGAGCAATATTGAATCAACAAATTTTCATTTTGAATCAATGTTGAGTCTATTGAATCCTAGTATGTTGAATCTTAGGGAGGATGAAGCTTTGGTTATAAATTGCCAAAATTGGCTACGTTATTTATCTGATGATAGAAAGGGTCAAAATATTTCACTTAGAGATGCTTTTATGAATTTAGTTAAAGGACTTAACCCTCAAATAGTGCTATTGGTTGATGAGGATTGTGATCTTAGTGCATCAAGTTTAACATCAAGAATTACTGCTTCTTTTAACCATTTATGGATACCCTTTGATGCATTGGACACCTTTTTACCTAAAGATAGTTGTCAAAGGACAGAGTTTGAATCTGACATAGGACAAAAAATTGAGAATATTATAAGCTTTGAAGGGCATCAAAGGATAGAGAGATTGGAGTCAGGGATGCAAATGTCACAAAGAATGAAAAATGCTGGTTACTTTAGCGTTCCATTTTGTGAGGAAACTGTTTTGGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGATGGGGAATGAAAAGAGAAGAAAGCATGTTGGTTCTTACATGGAAAGGAAATAGTTGTGTGTTTGCAACCGCTTGGGTCCCTAGTGAAATTAGGGATCATATCGGTATGGATGCACATGTGTCGTAA 1377 0.3638 MHVHMKAELKATSISFQNPTLFNTHQNTPPLPEPEELKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPTSMNFKGSNYTIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKSIKGFKRVHILDFSITPCMQWPTFIDSLAKLPEGPPSLRITVPSFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNVSLTSEDLSNIESTNFHFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDDRKGQNISLRDAFMNLVKGLNPQIVLLVDEDCDLSASSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNAGYFSVPFCEETVLEVKGLLDEHASGWGMKREESMLVLTWKGNSCVFATAWVPSEIRDHIGMDAHVS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3007 458 Pfam GRAS domain family 50 442 IPR005202 -
Mtr2g3007 458 PANTHER OS05G0500600 PROTEIN 6 444 - -
Mtr2g3007 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 444 IPR005202 -
Mtr2g3007 458 ProSiteProfiles GRAS family profile. 40 443 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3007 Mtr-Chr2 43712511 43714777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3007 12 444 GRAS Transcription Factor Family AT3G49950 43.891 1.73e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr2g3007 GRAS 1.8e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3007 - - gmx:100805056 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3007 2 43712511 43714777 Mtr2g3007 2 43712511 43714777 ECH