Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3005 ATGGACCCAAATTCACACTCAATCTTTTCCGGTGACACCACCGTAGACCCAATCTTCTCCAACTTCACCCTCCAATCTCTTCTCACTCTCAACCCTTCTTACTTCTCCGACAACTACCACCACATTTTAACCGACGATTCACCTCCTCTTCCTAACTTCCCTGAATCCATTGACCAAACACAAGATCTTTTCAACAACGTTAACAAAAAACACTTCCTTGTTCCAAAACCAGAACACCCTTTTAACCTACCTTCATTAGAAGAATATCTCCCATTTCAACCACGACAACAACAACCCTTCAACTTCTTCCCTAAACACCTACCACCATTTGAACCTCTCCACCGTCTTCCTCAACTCCGTTCACCGGAACCCTCCAACAGAAAACGTCTCCACCCAGAAACCACCCCATCACCACCACCACCTTCTTCTTTGATTCCACAAAGCAACTTAGCAAGACAAAGAAGACAAAAACTAAGCGAGAAAACACGCTGTCTTCAGAAACTAATGCCATGGGACAAGAGAATGGATCAAGCTACTCTTTATGAAGAAGCTTACAAATACGTTAAGTTTTTGCAGGCACAGTTATCTGTTCTTCAATCAATGCCTTCTTACGGTGTCGGCTACGGCGGTGGTGGAACTACTGCTTCTGGTGGTGTTTTTGATGACTTGGAGAAGCTGAAAAGAAACCAAGCTTTGCAGATTCTGGTGAACTCACCGGTTGCACAAACAAAGCTTTGTGAACGAGGTTACTGTGTTTTCTCCATGGAACAATTCTCTCTGCTGAAGAAATTATCAGAAAAAAGACAACAACAAGAGAATTTTTCTGAACATGGTTCTTCAAAAACTTTCTTTCACTGA 858 0.4266 MDPNSHSIFSGDTTVDPIFSNFTLQSLLTLNPSYFSDNYHHILTDDSPPLPNFPESIDQTQDLFNNVNKKHFLVPKPEHPFNLPSLEEYLPFQPRQQQPFNFFPKHLPPFEPLHRLPQLRSPEPSNRKRLHPETTPSPPPPSSLIPQSNLARQRRQKLSEKTRCLQKLMPWDKRMDQATLYEEAYKYVKFLQAQLSVLQSMPSYGVGYGGGGTTASGGVFDDLEKLKRNQALQILVNSPVAQTKLCERGYCVFSMEQFSLLKKLSEKRQQQENFSEHGSSKTFFH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3005 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 200 IPR036638 GO:0046983
Mtr2g3005 285 Gene3D - 147 203 IPR036638 GO:0046983
Mtr2g3005 285 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 281 IPR045843 GO:0003700|GO:0006355
Mtr2g3005 285 SMART finulus 148 197 IPR011598 GO:0046983
Mtr2g3005 285 MobiDBLite consensus disorder prediction 113 157 - -
Mtr2g3005 285 PANTHER TRANSCRIPTION FACTOR BHLH117 4 281 - -
Mtr2g3005 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3005 Mtr-Chr2 43681910 43683075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3005 154 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.429 1.78e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3005 - - cam:101498441 352.829