Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3000 ATGGATATGGATTCAACAGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTGCTTCTACTTTCACCTGGATGCCTCAGCCTCAGTCTCAGACTCAGATCATCAATCCTCCTTCCTCCCATATGAGCTTGGAAATGGATTACTCCCTGGATTCAACTGTAATGGAAAGTAACCCTTCAAAGCGCATGGAAATGGAATACTCACTGGATTCAACAGTACTGGAAAACGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAGGTTAGCCTATTAAATGACGCGGTTCGAGTGGTGACCCAATTAAGAAATGAAGCTGAGAGGCTCAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCCGAGAAGAAAGAGCTTCGTGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTCAAATTAGCAAGTGTACAGTCCAACTTCCTCTCTAATGCAATGGCTGCTAAAGGACAAACTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCAGTTGCTTAA 783 0.4291 MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAASTFTWMPQPQSQTQIINPPSSHMSLEMDYSLDSTVMESNPSKRMEMEYSLDSTVLENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNFLSNAMAAKGQTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3000 260 SMART finulus 111 162 IPR011598 GO:0046983
Mtr2g3000 260 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Mtr2g3000 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Mtr2g3000 260 CDD bHLH_AtILR3_like 110 185 - -
Mtr2g3000 260 Coils Coil 146 208 - -
Mtr2g3000 260 Gene3D - 108 186 IPR036638 GO:0046983
Mtr2g3000 260 PANTHER BHLH TRANSCRIPTION FACTOR 1 260 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Mtr2g3000 260 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 260 - -
Mtr2g3000 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3000 Mtr-Chr2 43648998 43651853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3000 93 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.322 1.93e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3000 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3000 - - mtr:MTR_2g089000 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3000 2 43648998 43651853 Mtr2g3000 2 43648998 43651853 ECH