Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2985 ATGAGGATTATTATTGCCACAGAAATAAACCAATTTTTCATTGAAGTAGGAACCCTAGAAACAGTTTTAGAAATCAAAAGGAAAATAGAACAAATCCATGCTATTCCAGTGGCTTACCAAATCCTAACAGTGTGTGGGTTTGAACTACTGGATGGATTAGACATGGAAGATTACCCAATAGTCAGTGAAGGCACAAAAATTGACCTCACCATCAAGCCAATGGAGCCACATATCATTCACCATCCTAACAAAATGCAAATCACAGTAAAATTCTCAGCTAGACTGATTAACATAGAGGTGGATAAGACAGATACTGTCCATAGCTTGAAGGAAAAAATTCACATCATTGATAACACCCCCATCAAATCAATGAAGCTTTTCTTTTTGGGGAGGGAACTGAATGAAGATTTCCGAAACCTAAATGAATATGGTATTCGTGAATTTTCTGAAATTATTGTGTTCCTCAAGACCACAAACCGGACAAAAGAACCACCAACTAGAAAGCTGAGCTTTGTGCTACAAACTTCCTCTAGTTTGCTTAATGCAGCCACCATTCCATTGGAGATGAAAGATACAAGCACGGTTAATGACTTGAAGCAGTTGCTGCTGAGCAGAAAAATTCTGCCAGTTGATGATTATTTGTTTATTCATAGGCAGAGGATCATGCGTGATAGTTGTAGCCTTAGGTGGCATGGAGTTGAAAATGGAGACCAGCTCTATGTGTTTAAAGGGACGGTTAGTCGCAGTGGGTATGTCTGA 759 0.39 MRIIIATEINQFFIEVGTLETVLEIKRKIEQIHAIPVAYQILTVCGFELLDGLDMEDYPIVSEGTKIDLTIKPMEPHIIHHPNKMQITVKFSARLINIEVDKTDTVHSLKEKIHIIDNTPIKSMKLFFLGRELNEDFRNLNEYGIREFSEIIVFLKTTNRTKEPPTRKLSFVLQTSSSLLNAATIPLEMKDTSTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDQLYVFKGTVSRSGYV* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2985 252 SMART ubq_7 1 72 IPR000626 GO:0005515
Mtr2g2985 252 SMART ubq_7 85 156 IPR000626 GO:0005515
Mtr2g2985 252 SMART ubq_7 173 244 IPR000626 GO:0005515
Mtr2g2985 252 SUPERFAMILY Ubiquitin-like 180 244 IPR029071 -
Mtr2g2985 252 Pfam Ubiquitin family 10 72 IPR000626 GO:0005515
Mtr2g2985 252 Pfam Ubiquitin family 180 241 IPR000626 GO:0005515
Mtr2g2985 252 Pfam Ubiquitin family 87 157 IPR000626 GO:0005515
Mtr2g2985 252 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 250 - -
Mtr2g2985 252 Gene3D - 174 244 - -
Mtr2g2985 252 SUPERFAMILY Ubiquitin-like 79 158 IPR029071 -
Mtr2g2985 252 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 250 - -
Mtr2g2985 252 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Mtr2g2985 252 Gene3D - 84 156 - -
Mtr2g2985 252 Gene3D - 1 72 - -
Mtr2g2985 252 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Mtr2g2985 252 CDD Ubl_ubiquitin_like 12 69 - -
Mtr2g2985 252 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Mtr2g2985 252 CDD Ubl_ubiquitin_like 184 242 - -
Mtr2g2985 252 ProSiteProfiles Ubiquitin domain profile. 85 160 IPR000626 GO:0005515
Mtr2g2985 252 CDD Ubl_ubiquitin_like 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2985 Mtr-Chr2 43528100 43528858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2985 85 164 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.568 9.09e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2985 - - lang:109342690 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2985 2 43528100 43528858 Mtr2g2985 2 43528100 43528858 ECH