Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2960 ATGGCGAAAACGATCTCGAACAACGATGAAAATGTTGAGGTTGACATTGATTCATCAAAAGACGATGTTGATGCTAGAACTGGCATGAAGAAGGGACCGTGGACCCCACATGAAGACATGATTTTGACAGAGTACGTGAATAAGCATGGTGAAGGGAATTGGAATTTTGTTCAGAAGAATTCAGGATTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGATGGGCTAATCATCTGAGGCCGAATCTTAAAAAGGGTTCATTTTCTGAAGAGGAAGAAAAAATCATCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCTACTCAGTTGCCCGGAAGAACAGATAACGAAATCAAAAACTTTTGGAACACAAGAATGAAAAGGCGTCAAAGAGCCGGCTTACCTCTTTATCCTCCAGAAATCCAAGCAGAAGCTATTGCATACAATGATAAACTATTGCAACTACAACATCAACCTTTATCTTCTTCATCATTATCATTTTCTTTACTCTTATCTTCTTGTTACCCTAAGAAGATTGATGATCCAAACCATTATGATTATAATCTTCTAGAGAACAACTCTGGTTCTGCTAACAATCACAACACCAATCCATGTCCACAATTCAACTTTTCCAATGATGAAAACATTGAGATTAATGAAACTCTTGCTTTGCAAAAATCACCTTCACTTTCACCTTATCCATCTTCATCATCAAATCTTTTCAACCAGAATTTTACTCCTCCAAGTGATTCACATGATTACCAATACTCTGAAAATTTGAGCTTTGAACATCATGGATTCAATGCAGGATCTCTGTATGATTCTAAAACTCCTGCTTCATCTTATGCTAGTGGCGTTGATGGTAATTTTATGGGAAATTCAAGCATGGTTAATGATTACTATGAAGTTGCACCATTATCACATGATGGAAAAAATAGTGGACTTTTGGACGATCTTGTGATGGAAGGTAGAAGTATTTCTTGCAATAAGGGGGATGTATCTCATAAGAGGAAAAACATGGAGGGTGAAGAATACGAAGATGAAGAAGGCATTGTTCCTTTGGTGTCAACCATGAAGAAGAAGAAGAGCATTGATGAGAGTCAGAAGAAAGATTTTAGCTCTTCTCAATTGTCAACAGGAAAGAAACCAGCCCAGGAGGATCAGACGGAAGAACTGAATACAATGTATGATGATGATTTGGATTGCTTGCTCAACAATTTTCCCTCAGAAATACCAATGCCTGAATGGTATTGTAGAGGAAAAAGTCAGTCATTGGGAACTGAAATTCCAACTGATGAAAGCGGTCCCACCAATCAAGAATTTGCTTGGACTCTTGGATCAAATTGGAACAACATGCCAGGCATATGTTAA 1380 0.3797 MAKTISNNDENVEVDIDSSKDDVDARTGMKKGPWTPHEDMILTEYVNKHGEGNWNFVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEEEEKIIIELHAKLGNKWARMATQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEIQAEAIAYNDKLLQLQHQPLSSSSLSFSLLLSSCYPKKIDDPNHYDYNLLENNSGSANNHNTNPCPQFNFSNDENIEINETLALQKSPSLSPYPSSSSNLFNQNFTPPSDSHDYQYSENLSFEHHGFNAGSLYDSKTPASSYASGVDGNFMGNSSMVNDYYEVAPLSHDGKNSGLLDDLVMEGRSISCNKGDVSHKRKNMEGEEYEDEEGIVPLVSTMKKKKSIDESQKKDFSSSQLSTGKKPAQEDQTEELNTMYDDDLDCLLNNFPSEIPMPEWYCRGKSQSLGTEIPTDESGPTNQEFAWTLGSNWNNMPGIC* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2960 459 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 436 - -
Mtr2g2960 459 Gene3D - 86 132 - -
Mtr2g2960 459 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 436 - -
Mtr2g2960 459 MobiDBLite consensus disorder prediction 362 391 - -
Mtr2g2960 459 SMART sant 83 131 IPR001005 -
Mtr2g2960 459 SMART sant 30 80 IPR001005 -
Mtr2g2960 459 MobiDBLite consensus disorder prediction 335 354 - -
Mtr2g2960 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Mtr2g2960 459 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Mtr2g2960 459 MobiDBLite consensus disorder prediction 1 32 - -
Mtr2g2960 459 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Mtr2g2960 459 Gene3D - 30 83 - -
Mtr2g2960 459 MobiDBLite consensus disorder prediction 18 32 - -
Mtr2g2960 459 CDD SANT 33 78 IPR001005 -
Mtr2g2960 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 78 IPR017930 -
Mtr2g2960 459 MobiDBLite consensus disorder prediction 230 252 - -
Mtr2g2960 459 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Mtr2g2960 459 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Mtr2g2960 459 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2960 Mtr-Chr2 43239444 43242482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2960 28 163 MYB Transcription Factor Family AT2G32460 78.169 1.10e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g2960 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2960 K09422 - gmx:100798860 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2960 2 43239444 43242482 Mtr2g2960 2 43239444 43242482 ECH