Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2956 ATGGAGATGGAGTGGACTAGAGGCAACATCATCGGACATGGCTCATCCGCCACCGTCTACCTCGCCACCTCTCGTCGCTCCACCGATGTCTCCGCGGTTAAATCAGCGGAGACATCACTACCAAACTCAAACCAACTCCAGAGTGAACAAAGAATTCTTTCTTCTCTGTCCTCTCCTTACATAGTTACCTACAAAGGTTGCAACTTTTCAAAGGAGAATAACAAGCACTTGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAAATCTCTCTCAGGTGACTTGCCGGAACGGTGGCCGGCTCAACGAGGCGATGATAGCATACTACACAAGACAAATTGTGGAAGGACTTGAGTACTTACATTCAAAAGATGTAGTGCATTGTGATATCAAAGGTAGTAACATATTGGTATGTGAAAAAGGAGTTAAAATAGGAGACTTTGGTTGTGCAAAGATGATCGATGAAATTGCGCCAGCTGCCGGAACACCGATGTATATGGCGCCGGAGGTGGCGCGCGGCGAAGAACAAGGGTTCCCTTGTGATGTTTGGTCACTTGGTTGCACTATTGTTGAAATGGCAACTGGTTTTTCACCTTGGTCCAATGTGGAAGACTCTGTTCATGTTCTGTATCGTGTTGCATATTCTGACGAAGTTCCTATGATTCCTTGTTTTTTATCTGAACAAGCAAAGGATTTCTTGGAGAAGTGCTTAAGGAGGGATTCTAAGGAGAGGTGGAGTTGTAGTCAATTGTTGAAGCATCAATTTCTTGATTGTGGTGTTGAGAAAATTGAAGAATTTGATTCATGTTCACCAACTAGTATTCTTGAACAGGGCTTTTGGAATTGTGATGAAGGGTCAGAAAGTTTCTTTTTTGATGATTTGGGTAAGATTAATTTTGTGAATTGTCCTGTTGGTAGGATAAAAAAGCTAGCTTTGTGTTCAAGGGATCCATGTTGGAAATGGGGTGATGAGAATTGGATTACAACTAGAGAGAATGATGCAGATGCAGGGTCTTCAATTAGTGATGAATTGGATTTTGATGAGTTAGAGAAAAGTGATTTTAGTGGTAGAATTAGTGGTGATTATTTTGGTTATGATTATTCTAATTGTAAGATTAGGGATGTTAGTTATGTAGCTAATAGCCTTAATTTTGGGAGAGGCATTGGAAGGTTGATGCCCCAATCAACATTAGATTTTTTATAA 1203 0.4106 MEMEWTRGNIIGHGSSATVYLATSRRSTDVSAVKSAETSLPNSNQLQSEQRILSSLSSPYIVTYKGCNFSKENNKHLFNLFMEYMPFGNLSQVTCRNGGRLNEAMIAYYTRQIVEGLEYLHSKDVVHCDIKGSNILVCEKGVKIGDFGCAKMIDEIAPAAGTPMYMAPEVARGEEQGFPCDVWSLGCTIVEMATGFSPWSNVEDSVHVLYRVAYSDEVPMIPCFLSEQAKDFLEKCLRRDSKERWSCSQLLKHQFLDCGVEKIEEFDSCSPTSILEQGFWNCDEGSESFFFDDLGKINFVNCPVGRIKKLALCSRDPCWKWGDENWITTRENDADAGSSISDELDFDELEKSDFSGRISGDYFGYDYSNCKIRDVSYVANSLNFGRGIGRLMPQSTLDFL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2956 400 CDD STKc_MAPKKK 4 256 - -
Mtr2g2956 400 SUPERFAMILY Protein kinase-like (PK-like) 5 276 IPR011009 -
Mtr2g2956 400 ProSiteProfiles Protein kinase domain profile. 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g2956 400 PANTHER MAP KINASE KINASE KINASE 3 354 - -
Mtr2g2956 400 Pfam Protein kinase domain 7 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g2956 400 SMART serkin_6 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g2956 400 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 354 - -
Mtr2g2956 400 Gene3D Transferase(Phosphotransferase) domain 1 2 283 - -
Mtr2g2956 400 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Mtr2g2956 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2956 Mtr-Chr2 43170170 43171511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2956 3 281 MAP Kinase Kinase Kinase AT2G32510 52.069 1.45e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr2g2956 Pkinase 2.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2956 K20716 - pvu:PHAVU_005G115900g 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2956 2 43170170 43171511 Mtr2g2956 2 43170170 43171511 ECH
Mtr2g2956 2 43170170 43171511 Mtr4g4938 4 63518000 63519546 ECH
Mtr2g2956 2 43170170 43171511 Mtr4g1455 4 25862760 25864228 PCT