Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2955 ATGGCCAGTGGAGGCCTTGGACTCTCCATTGATTCAGATCCAAATTCAAGCTTCTTATACCATAAACAAATAGAATTCTCAACTCTTTTCCTCAACACAACAACTCCAAAAACTTCAAGTGGAAACTTATATAGTCACAAAATGGATACCACAAACAACAAAAACAAAAACAAAAACAAAAACAAATCTCCATTTCAAGTCAACCATGAAATATCTCATCAACCATTTGATCATGAAATGAGACCTATCATCAATGAACTAGACTTTTTCTCTCAAAACAATAACCATCACAATCATTCATCTGCATCTGCATCTGCCTCTACCTCTACACCTCCCTCACTAAATCTTCATCATCATCATATAAATGATCATTACACCGATCCTTCTCTCTTGGAATTCAAAGTAAACACTAGTTTGAATCTTCTCACCACCAACACAAGCAATGATCAATCCATGATGGAGGAAGACATAGCAAGTGATTCAGAAGACAAAAGAGCTAAGCTTGAGCTCGTCGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATCAACTGAGGAACATGCTTGATGAGGGTAATAGGAAGTACAACACATTGCAGATGCATTGGATGAGTATGGTGCAAGACAAGAAGGTAGAGGATTGTAATGAAGAGCAAAAACAAGTGATGGGTGGAAAACTTGATGAGGAGAAACAAAATGGGAATGGTGGAGTTTTGGTTCCGAGACAATTTATGGAGCTTGGATTGCCTGCTAATCATTCTGATGCTATTGATGAACCAAGAAGTCAAGATCAGTCAAAATCACTTGCAAACAACAATGAGGAAGGTTCCAAGGATGAAGAACTTGTGTTAGATCATGACAAAAAGGAATCTGATCGGGGAAATGAGAGAAACGGTAGTCCTGCTGATCGAGTTTTAGCTGCTAATAATAATAATAATGTTGCAAACTTTAGTCCTCAAACAAATGTTGAACAAGCTGAGGCCACTATGAGGAAAGCAAGGGTTTCAGTTCGAGCTCGATCCGAGGCTAACATGATCAATGATGGGTGTCAATGGAGAAAGTACGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGGCTTTAGGTTGTCCGGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAAAACAATACTTATCACAACATATGAAGGACACCACATTCATGCTTTGCCTCCAGCAGCTATGGAAATGGTACAAACAACATCATCAGCTGCAAGAATGTTGCTGTCAGGACCAATGACAAGTGCAGATGGACTAATGAACCCAAATTACCTCACAAGAGCAATCCTTCCTTATTCTTCAAGCATAGCAACTATCTCAGCATCAGCTCCATTTCCAACTGTTACATTGGACCTAACTCAGTCACCAAATCAAAACCAGTTCCCTAATAACCACTCAAACCAGTTCCAATTTCCCTTCCCTCAAAATTTTCTGCCTCAGGTTTTTGGTCAGACATTGTTGAACCAATCAAAATTTTCAGGACTTCAAATGTCTCAAGATGCAGCAAACAGTTCTCAGCAGACACCACAGAACCTTGCTGACACAGTTAATGCTATTGCAGCTGATCCTAACTTCACTGCAGCTTTAGCAGCTGCTATTACTTCAATTATTGGGGCGGCGCAGCCAAACAATAACAACGGTACTAGCAATAATGGTAACGGTACAATAGCTAATAACAGTAATGGCAATGTTACATCAAGTAACAATACCAATGGAAGCCCTAAAATCAACAATCCCAACTCTTCAGTAGAGTAG 1809 0.4002 MASGGLGLSIDSDPNSSFLYHKQIEFSTLFLNTTTPKTSSGNLYSHKMDTTNNKNKNKNKNKSPFQVNHEISHQPFDHEMRPIINELDFFSQNNNHHNHSSASASASTSTPPSLNLHHHHINDHYTDPSLLEFKVNTSLNLLTTNTSNDQSMMEEDIASDSEDKRAKLELVVLQAELERMKVENHQLRNMLDEGNRKYNTLQMHWMSMVQDKKVEDCNEEQKQVMGGKLDEEKQNGNGGVLVPRQFMELGLPANHSDAIDEPRSQDQSKSLANNNEEGSKDEELVLDHDKKESDRGNERNGSPADRVLAANNNNNVANFSPQTNVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGHHIHALPPAAMEMVQTTSSAARMLLSGPMTSADGLMNPNYLTRAILPYSSSIATISASAPFPTVTLDLTQSPNQNQFPNNHSNQFQFPFPQNFLPQVFGQTLLNQSKFSGLQMSQDAANSSQQTPQNLADTVNAIAADPNFTAALAAAITSIIGAAQPNNNNGTSNNGNGTIANNSNGNVTSSNNTNGSPKINNPNSSVE* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2955 602 Gene3D WRKY domain 333 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr2g2955 602 MobiDBLite consensus disorder prediction 91 121 - -
Mtr2g2955 602 MobiDBLite consensus disorder prediction 216 239 - -
Mtr2g2955 602 MobiDBLite consensus disorder prediction 91 116 - -
Mtr2g2955 602 MobiDBLite consensus disorder prediction 37 66 - -
Mtr2g2955 602 PANTHER OS05G0567200 PROTEIN 75 581 - -
Mtr2g2955 602 Pfam WRKY DNA -binding domain 349 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr2g2955 602 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 75 581 IPR044810 GO:0003700
Mtr2g2955 602 MobiDBLite consensus disorder prediction 254 319 - -
Mtr2g2955 602 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr2g2955 602 MobiDBLite consensus disorder prediction 275 301 - -
Mtr2g2955 602 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr2g2955 602 MobiDBLite consensus disorder prediction 560 602 - -
Mtr2g2955 602 SMART WRKY_cls 348 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr2g2955 602 Coils Coil 163 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2955 Mtr-Chr2 43155615 43159333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2955 135 571 WRKY Transcription Factor Family AT1G62300 48.696 9.00e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr2g2955 WRKY 3.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2955 - - gmx:100127384 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2955 2 43155615 43159333 Mtr2g2955 2 43155615 43159333 ECH
Mtr2g2955 2 43155615 43159333 Mtr2g0842 2 8526807 8529598 ECH
Mtr2g2955 2 43155615 43159333 Mtr4g4940 4 63541489 63543915 ECH
Mtr2g2955 2 43155615 43159333 Mtr4g1457 4 25884352 25887901 PCT