Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2943 ATGGACGAGGTTCCTGTGATTGAAGAGAATGAGACGAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTTGAAGGTGGAATTCAGGATGCTTGTGATGATTCTTGTAGTATATGTCTTGAAGAATTCATCGACAGTGATCCTTCTACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTCGAATGGTGTCAGAGGAGCTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAGGATCCAACGGGCCAGGAATTGCTCGAGGCAGTTGAGAGAGAGCGGAACATTAGGTTCAATCCGACTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATTCTCCAACACTTTGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATATGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCCCCACCTCAGAGAGGGGATGGTGAACAGACTCCTGCGACCGGAGAAGAACCACCACAGCTCACTTTAGTTCCTCCAGTTCAAACCGACCAGGTTTCTGCTTCAGGATCTGGGTCTGCTGCTCTTGCTACTGACAATCTGGGATTATCTTATAACAGCAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGCCAAGACAGAGCAGGACCATCAGAACTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTAAATGCCGTGTCTACAAGATACAAAGAGTCAATTTCTAAGAGCACAAGAGGGTGGAAGGAAAGGTGGTTCTCTCGGACTAGCCCTATGTCTGATCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCTTGGAGACCAGAGACAATAATAGAAGCAGTAGTGATACTGCTCCAAGTAACTTAGCAGATGGCCCAATTCAGGGATCAAGTGATCAGCATTTAACAGACACTGAAAGGGACAGTCCTTTGAGAGACAATAACTCAAAAACATCTTGCACTGCAGGTTCCAGTTCAAATTAA 1149 0.4595 MDEVPVIEENETKSEAHLTSAAAFVEGGIQDACDDSCSICLEEFIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRFNPTRNATIFHHPTLGDFELQHLPVGANDADLEERILQHFAAAAAMGRARHIARREGQRNRSSAQGRPQYMVFSAHPNSPPMAPASSSPPQRGDGEQTPATGEEPPQLTLVPPVQTDQVSASGSGSAALATDNLGLSYNSRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRTSPMSDLGSEVKREVNAGIATVSRMMERLETRDNNRSSSDTAPSNLADGPIQGSSDQHLTDTERDSPLRDNNSKTSCTAGSSSN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2943 382 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Mtr2g2943 382 MobiDBLite consensus disorder prediction 238 310 - -
Mtr2g2943 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 382 - -
Mtr2g2943 382 Pfam Ring finger domain 35 77 IPR001841 -
Mtr2g2943 382 MobiDBLite consensus disorder prediction 326 382 - -
Mtr2g2943 382 SMART ring_2 37 77 IPR001841 -
Mtr2g2943 382 MobiDBLite consensus disorder prediction 238 284 - -
Mtr2g2943 382 SUPERFAMILY RING/U-box 30 84 - -
Mtr2g2943 382 MobiDBLite consensus disorder prediction 153 212 - -
Mtr2g2943 382 MobiDBLite consensus disorder prediction 334 355 - -
Mtr2g2943 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 382 - -
Mtr2g2943 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2943 Mtr-Chr2 43056368 43060098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2943 34 85 C3H Transcription Factor Family AT5G15790 46.154 2.37e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2943 K19043 - gmx:100780275 597.43