Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2896 ATGGGGGATTCCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAAGAGCTAGTTGGCTTCTATCTACACAACCAGTTGGAAGGACAAAAGCATGAAGACATAAACAAAATCATACCTCTCATTGATATCAATGGCAAAGAGCCATGGAACCTTCCAACATTTGCAGGGGAGAGATGTCGTGGAGACACGGAACAATGGTTTTTCTTTTCACCAAGACAAGATAGAGAGTTGAGAGGAGGAAGACCAAACAGAACAACATCTTGTGGGTATTGGAAAGCTACGGGTTCTCCTAGCTACGTTTACTCTTCTAACAACAAAGTCATTGGAATAAGGAAAACCATGGTGTTTTACATAGGAAAAGCTCCATCTGGAAGGAAAACCAAATGGAAGATGCATGAATATAAAGCCATTCAACAATCTGACCAATCCAATACAAACCCTCCTAAGCTGCGACACGAATTCAGCTTGTGTCGCGTTTATGTGATATCGGGAAGCTTTAGTTCGTTTGATCGAAGACCATTAGAGAGGCCAATGACGGAGTTACAACATGCTGCTTCAACAAGTACTCAACAAGTGGTGGCAGAGCTCAATGGATCAAACTCGTATGCAACTTCTCGAGGGATAGAGAGAGACCATGATGCTTCTCTTAATATTGGAGGGTCAAGTGGCACAAATTGGAATGATGTACCAAATAATGGGGTTGATGAACCTGAACCTATTTGGGAATGGGAACAACTAAATTGGATCTAA 750 0.4227 MGDSPPGFRFYPTEEELVGFYLHNQLEGQKHEDINKIIPLIDINGKEPWNLPTFAGERCRGDTEQWFFFSPRQDRELRGGRPNRTTSCGYWKATGSPSYVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKAIQQSDQSNTNPPKLRHEFSLCRVYVISGSFSSFDRRPLERPMTELQHAASTSTQQVVAELNGSNSYATSRGIERDHDASLNIGGSSGTNWNDVPNNGVDEPEPIWEWEQLNWI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2896 249 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Mtr2g2896 249 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Mtr2g2896 249 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Mtr2g2896 249 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 249 - -
Mtr2g2896 249 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 249 - -
Mtr2g2896 249 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2896 Mtr-Chr2 42540567 42542420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2896 7 248 NAC Transcription Factor Family AT5G22380 53.306 8.92e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr2g2896 NAM 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2896 - - gmx:100784960 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2896 2 42540567 42542420 Mtr2g2896 2 42540567 42542420 ECH
Mtr2g2896 2 42540567 42542420 Mtr4g1540 4 27131182 27133605 PCT