Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2881 ATGTATCATCATCATCATCAAGGAAAAAATATTCACTCTTCTTCAAGAATGTCAATACCATCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTAGTGATTCAGGACTTGTGCTCTCAACAGATGCAAAACCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATCGAAGCAGTTAATCAGTTAGGCGGAGCGGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCAGGGCTTACCTTATACCATTTAAAGAGTCATCTTCAGAAGTACAGATTAAGCAAGAATCTGCATGGACAAAGCAGCAGTAATGTGACACACAAAATAAACACACATGCAACTTCAGTAAGTGATGAGAGGCTTTCTGAAACCAATGGAACTCACATGAATAAATTAACCCTTGGACCACAGACTAATAACAACAAAGATTTGCACATAAGTGAGGCGCTGCAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTAAGGATAGAAGCTCAAGGGAAATACCTTCAATCAGTGCTTGAAAAAGCTCAAGAAACACTTGGTAGACAGAATTTAGGAATAGTAGGGCTTGAAGCAGCAAAAGTTCAACTATCAGAGCTTGTGTCAAAAGTATCCTCACAGTGTCTGAATTCAACATTTTCAGAGATGAAAGAGTTACAAGGATTTTGTCCTCAACCAAACGACGGCTCGATGGACAGTAGTTGCTTAACATCGTCTGACCGATCACAAAAGGAACAAGAGATCATTCAAAATGGAGGGTTTGGATTAAGACACTTCAACAACAATAATAACAACCATGTGTTCATGGAAAGAAAAGAACAACAAGCAACAGAATTAGCAGGTTCTGTTCAAAACCTTAGAAACAATGAAGTACTAAAATGGTGTGTTGAGGAAGTGAAAAAGAACAGTAATTTTCTAACTCCATTAGGAAATAATAATGAATTAGAAAGAAATCATGGAAATTTGTCTATGAATATTGGAGTTGAGAATCACTTAGATATTGGTGAGTTTCAACAAAGGAACACTGCAAGATTGGATCTAAACAGTCGTGGAGATAATAATGAAGGTGCTACAACTTGTAAACAACTTGATTTGAATAGGTTCAGTTGGAACTAA 1170 0.3744 MYHHHHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSSSNVTHKINTHATSVSDERLSETNGTHMNKLTLGPQTNNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQPNDGSMDSSCLTSSDRSQKEQEIIQNGGFGLRHFNNNNNNHVFMERKEQQATELAGSVQNLRNNEVLKWCVEEVKKNSNFLTPLGNNNELERNHGNLSMNIGVENHLDIGEFQQRNTARLDLNSRGDNNEGATTCKQLDLNRFSWN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2881 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Mtr2g2881 389 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Mtr2g2881 389 Coils Coil 287 307 - -
Mtr2g2881 389 Gene3D - 44 102 - -
Mtr2g2881 389 Pfam MYB-CC type transfactor, LHEQLE motif 151 197 IPR025756 -
Mtr2g2881 389 PANTHER MYB-RELATED PROTEIN 2 4 389 - -
Mtr2g2881 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 389 IPR044848 GO:0003700
Mtr2g2881 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Mtr2g2881 389 Coils Coil 153 173 - -
Mtr2g2881 389 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2881 Mtr-Chr2 42436342 42438425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2881 77 389 G2-like Transcription Factor Family AT3G04030 49.552 2.16e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr2g2881 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2881 - - gmx:100810396 524.628