Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2871 ATGGGTTTGAGGGATCAGTGCAATGTAGAAGACAAGAATCTATACCTTCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTAATTCCTCACTCTCATCATCTCCTTCATCAACTCATCAACACAAACTATCCCAAGAAACTTTCCAGTTTTTACCAATCTCTAGTGGAATTAAGCCCTATGAGGACGATCATGGGATGCAAAAGGAAGATTTTGAAGTAAAAGAAGAGAAGGTTGAACATGTGACTGTGGCTTTGCACATTGGATTGCCTAACATAGGGGGTCATGAATCTGATGAACATGATGAGAAGAATAAGGTTTTTGATTGTGTTAAGGAAGAAGAATTGAAGAAAAACGTGCATGGTTTTTGTTTTAAGGAAGAGAGAAGGTTTTGGATACCAACTCCTGCTCAGATTCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGCAGTAAGACCTTCAATAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGACTACCATGTTATTGTTGTGCTCACGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTCCAAACTCATTACAAAAGAAAGCATGGAACAAAGCCATTTATCTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAAAAAAACTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCGGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCATTCCCCACTTCCTTCTCTTGAAGGCTTTGAAGATGAGAAAGAATGCAGCAATACCGGATCTGATGATGATGAAGTTGCTCATGCATGA 930 0.3903 MGLRDQCNVEDKNLYLQTPTFIEWLKPSNSSLSSSPSSTHQHKLSQETFQFLPISSGIKPYEDDHGMQKEDFEVKEEKVEHVTVALHIGLPNIGGHESDEHDEKNKVFDCVKEEELKKNVHGFCFKEERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPLPSLEGFEDEKECSNTGSDDDEVAHA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2871 309 Pfam C2H2-type zinc finger 146 165 - -
Mtr2g2871 309 MobiDBLite consensus disorder prediction 286 309 - -
Mtr2g2871 309 Gene3D Classic Zinc Finger 189 278 - -
Mtr2g2871 309 SUPERFAMILY beta-beta-alpha zinc fingers 137 169 IPR036236 -
Mtr2g2871 309 MobiDBLite consensus disorder prediction 279 309 - -
Mtr2g2871 309 Gene3D Classic Zinc Finger 145 168 - -
Mtr2g2871 309 SUPERFAMILY beta-beta-alpha zinc fingers 216 250 IPR036236 -
Mtr2g2871 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Mtr2g2871 309 PANTHER ZINC FINGER PROTEIN WIP2 41 305 IPR043584 GO:0003700|GO:0010468
Mtr2g2871 309 PANTHER ZINC FINGER PROTEIN WIP2 1 40 IPR043584 GO:0003700|GO:0010468
Mtr2g2871 309 SMART c2h2final6 146 168 IPR013087 -
Mtr2g2871 309 SMART c2h2final6 193 225 IPR013087 -
Mtr2g2871 309 SMART c2h2final6 230 250 IPR013087 -
Mtr2g2871 309 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 41 305 - -
Mtr2g2871 309 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 40 - -
Mtr2g2871 309 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2871 Mtr-Chr2 42347516 42351556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2871 10 299 C2H2 Transcription Factor Family AT1G08290 57.015 2.08e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g2871 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2871 - - gmx:100819306 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2871 2 42347516 42351556 Mtr2g2871 2 42347516 42351556 ECH
Mtr2g2871 2 42347516 42351556 Mtr4g1564 4 27375825 27381865 PCT