Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2858 ATGGAGGAGCATGAAAATGGCGCAAATGCAAGCGAAGACGAACCCATAGTTGGACCCGGTCCACCTCCACCTCCTCGTGCTCGACCCAAACGCCCTCTCCAGTTCGAACAAGCTTATCTCGACGCTTTACCTTCCGCTAACATGTACGAGAAAAGTTACATGCATCGTGATGTGGTTACACATGTTGCTGTTTCGGCTGCAGAGTTTTTTATTACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAGGCCTATTGGTATTGAGTTTGCAAAACACTTCAGATCTCATCTTGGTCCTATTGAGGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGTTCCGTAAAAGTATACGATGTAGTTAACTTTGATATGATGGTGATGATTCGGTTGCCATACATTCCTGGTGCTATTGAATGGGTTTACAATCAAGGGGATGTCAAAGCTAGTCTTGCCATTAGTGATAGGAACTCCTCTTTTGTTCACATATATGATGCACGATCTGGTTCAAATGATCCCATCATCTCCAAAGAGATTCATATGGGTCCTATTAAAGTTATGAAGTTCAATCCTGTGTACGATACTGTAATTTCGGCAGATATAAAGGGTATTATTGAATACTGGAACCCTACAACACTCCAGTTCCCGGAGGATGAGGTGAATTTTAAGGTCAGAAGTGATACTAACCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTCAGCCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGTAGGATACGTGTGTTTTGGTTCAAATCGGGTAAACTAAGGCGTGTTTATGATGAATCCCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATATCGATTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTTGAGAAAGAAATAGAGAAGACAGAAAGTGCACCACAACCAAATGCAGTTTTTGACGATAGTTCCAACTTTCTTATATATGCAACCTTGCTAGGGATTAAAATTGTTAATTTGCACACCAATAAAGTCGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCATGGTGAACGAAGTAGCAAAAAAGTTAGAAAGATTCCTTCAGCAGCTGCGAATGCTAATGAGAGCAAAGAGCCTTTGACAGACCCCACTCTCCTATGTTGTGCATTCAAAAAGCACAGAATATATTTATTCAGTCGAAGAGAGCCCGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCTGATATTGGAAAGTCACTTACAACTTCACTTCCTGAGAATGTGATTATGCATACCACTATGGGTGATATTCATATGAAACTATACCCAGAGGAATGTCCAAAATCTGTGGAAAACTTTACAACTCACTGCAAAAATGGCTATTATGACAATCTTATATTTCACAGGGTCATTAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGACGGCACTGGTGGGCAATCCATTTGGGGAAGAGAGTTTGAAGATGAATTTCATAAAAGTTTAAGGCATGATAGGCCTTTCACATTGTCAATGGCAAATGCGGGACCAAATACAAATGGTTCTCAGTTTTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTCGTTAGGGGAATGGACGTTGTCCAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTTTAAATGTCACTGTACCAAAGTCTTGA 1854 0.4051 MEEHENGANASEDEPIVGPGPPPPPRARPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSADGHLKFWKKRPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPYIPGAIEWVYNQGDVKASLAISDRNSSFVHIYDARSGSNDPIISKEIHMGPIKVMKFNPVYDTVISADIKGIIEYWNPTTLQFPEDEVNFKVRSDTNLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFKSGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPQPNAVFDDSSNFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYHGERSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSLTTSLPENVIMHTTMGDIHMKLYPEECPKSVENFTTHCKNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVRGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2858 617 MobiDBLite consensus disorder prediction 1 30 - -
Mtr2g2858 617 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 4 615 - -
Mtr2g2858 617 CDD cyclophilin_WD40 465 612 - -
Mtr2g2858 617 SUPERFAMILY WD40 repeat-like 57 280 IPR036322 GO:0005515
Mtr2g2858 617 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 460 614 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 MobiDBLite consensus disorder prediction 16 30 - -
Mtr2g2858 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 477 492 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 503 515 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 546 561 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 561 573 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 574 589 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 Pfam WD domain, G-beta repeat 93 127 IPR001680 GO:0005515
Mtr2g2858 617 Pfam WD domain, G-beta repeat 59 83 IPR001680 GO:0005515
Mtr2g2858 617 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 464 614 IPR002130 GO:0000413|GO:0003755
Mtr2g2858 617 SUPERFAMILY Cyclophilin-like 462 614 IPR029000 -
Mtr2g2858 617 SMART WD40_4 46 83 IPR001680 GO:0005515
Mtr2g2858 617 SMART WD40_4 88 127 IPR001680 GO:0005515
Mtr2g2858 617 SMART WD40_4 234 273 IPR001680 GO:0005515
Mtr2g2858 617 SMART WD40_4 178 217 IPR001680 GO:0005515
Mtr2g2858 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 83 IPR001680 GO:0005515
Mtr2g2858 617 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 498 515 IPR020892 GO:0003755|GO:0006457
Mtr2g2858 617 Gene3D - 452 617 IPR029000 -
Mtr2g2858 617 Gene3D - 43 439 IPR015943 GO:0005515
Mtr2g2858 617 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 4 615 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2858 Mtr-Chr2 42202148 42210256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2858 464 614 U-box Gene Family AT5G67530 47.020 1.33e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2858 K12736 - gmx:100792207 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2858 2 42202148 42210256 Mtr2g2858 2 42202148 42210256 ECH