Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2840 ATGGGGAGCAAGGTCACCGACCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCACCGACATGGAAATCATCAGAGCCTTACACTTGGCCAAAAACGACGTCACTTCCGCCATCAACATCATCTTCGATACTCAACGAGTTTCTCTTCCAAAATCCACTCCACGCGCTTCCAACACTCAACGAGGTTCTCCTCCGAATTCAACCCCACGCGCCGTCGTCCCAGGCGCTGTCACTGCCACTGCCACCTCCAAGAGCAACGCTAATGCAGAAAACAATAAATGCTCCGTCGAATTGGAATCCAAAGATTGGTGGTTTGTCGGTTCAGGCGAAGTGGCGGGGTTGTCCACTTGTAAAGGGAGGAATATAAAAGCCGGTGATAAAGTAATTTTTAAGTTTCCACCCAAGAAGGTTTCGGTTTCGCCGTCTCCGGGAAAAGGTTTCGGTCGAGCAGCGGCAAGTTGTTCTGAGATAGTGAGATTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCGAACGAATGGGCTCGATGTTTATTGCCATTGGTGCGGGATAATAAGGTTAGGGTTGAAGGGAAATGTGAATTTGCGCCTAATGTGTTGGGTATCATGGATTCTATCAATTTGTCAATCAGTGTCTTCATCAATAGGTCAATGTTTGTTAAGCATCATCAGGTTTCTCTTAAGGATGCTACGAATTCGACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCTGGCGATTTCTATTCCAACAAGCGTCCTTTCAGTCAAACGGCCACATTACTACATGCCAAGTCTGAGCATCCTTCTCAAAATGGTAACGAGAATGAAGACGAGGATTCTGTTTCTGAATTTGATCTTGACAACATTGTTGGTGTTGCATCAAGTTCAGAGTTAGAGGAAATGGACCCCCCTGGAAATCTTCTCTGTGAACTGCGACCCTATCAAAAACAGGCTCTTCATTGGATGGTTCAGATGGAGAAGGGACGGGCAAGGGATGAGACTGCAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGGATTTTAGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCACTTCTCGTTGCCCATTCAGGAAAGGGTGGATCATTAGGCAGTCAACCTATCGCTCAGTCCTTTATTGAAGGTGGTGAAGTTAGTGACACTGATACAATTCCAAATCTTTCAAAGGTTCCAAAGAAGACAACCAAATTTACTGGTTTTGATAAATCGACGAAGAAAAACACTTCTCTAACAAGCGGTGGCAACTTGATAATATGTCCTATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGACTCTGTCTTTATATGTTCATTATGGACAAGGTAGGCCCAAAGATGCTAAAAGTCTAGCTCAATGTGATGTTGTAATTACTACATACGGGATTTTGGCCTCTGATTTTTCCAGTGAGAATGGAGAGAATAATGGTGGACTCTTCTCAATTCGTTGGTTCAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCTGCCTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTCCGCTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGAAAGCCTATATTAGTTCTCCCTCCTGCCGATATGCAGATAATTTACTGTGAACCTACAGAAGCTGAAAAGGACTTTTATGAGGCCCTATTCAAAAGATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGACGCGTTCTTCATAATTATGCTTCAATACTAGAGCTGCTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTTGTAATGAGTCGTGGTGATACTCAAGAATTTGCTGACCTAAACAAATTAGCAAAGCGCTTCCTTAGAGGAACCTGTAATGCTTCAGAAGGTGAAGTAAAAGATGCACTCTCACGAGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTCGAAGATTCAGTGTTGACGCCCTGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTACCTCTGGTTTATGTCCTGTTTGTAGGAAAACAGTCAGCAAGCAGGATCTTATCACTGCCCCTACCGAGAGTCGATTTCAGATTGATATTGAGAAGAATTGGGTAGAGTCATGCAAGGTAACTGGTCTTATGAATGAACTTGAAAATCTTCGCTCATCAGGATCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATTTCATTTGTTCGTCTTGATGGGACATTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACATACAGGTGTTGTTGATGTCACTTAAAGCTGGTGGAGTTGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGTCAGTGGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGATCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3051 0.4441 MGSKVTDPNLSTVRSIVGSEFTDMEIIRALHLAKNDVTSAINIIFDTQRVSLPKSTPRASNTQRGSPPNSTPRAVVPGAVTATATSKSNANAENNKCSVELESKDWWFVGSGEVAGLSTCKGRNIKAGDKVIFKFPPKKVSVSPSPGKGFGRAAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVEGKCEFAPNVLGIMDSINLSISVFINRSMFVKHHQVSLKDATNSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQTATLLHAKSEHPSQNGNENEDEDSVSEFDLDNIVGVASSSELEEMDPPGNLLCELRPYQKQALHWMVQMEKGRARDETATTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGGSLGSQPIAQSFIEGGEVSDTDTIPNLSKVPKKTTKFTGFDKSTKKNTSLTSGGNLIICPMTLLGQWKAEIETHVHPGTLSLYVHYGQGRPKDAKSLAQCDVVITTYGILASDFSSENGENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTCNASEGEVKDALSRAYVQEVVEELRKGEQGECPICLEAFEDSVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSKQDLITAPTESRFQIDIEKNWVESCKVTGLMNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2840 1016 Gene3D - 389 659 IPR038718 -
Mtr2g2840 1016 ProSitePatterns Zinc finger RING-type signature. 796 805 IPR017907 -
Mtr2g2840 1016 SUPERFAMILY RING/U-box 768 827 - -
Mtr2g2840 1016 SMART ring_2 781 820 IPR001841 -
Mtr2g2840 1016 CDD DEXDc_SHPRH-like 332 647 - -
Mtr2g2840 1016 Pfam SNF2-related domain 335 725 IPR000330 GO:0005524|GO:0140658
Mtr2g2840 1016 CDD RING-HC 781 820 - -
Mtr2g2840 1016 SMART ultradead3 328 631 IPR014001 -
Mtr2g2840 1016 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 609 IPR014001 -
Mtr2g2840 1016 PANTHER DNA REPAIR PROTEIN RAD5 97 1016 - -
Mtr2g2840 1016 CDD SF2_C_SNF 847 974 - -
Mtr2g2840 1016 ProSiteProfiles Zinc finger RING-type profile. 781 821 IPR001841 -
Mtr2g2840 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 647 IPR027417 -
Mtr2g2840 1016 SMART HIRAN_2 109 218 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mtr2g2840 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 833 IPR013083 -
Mtr2g2840 1016 SMART helicmild6 880 963 IPR001650 -
Mtr2g2840 1016 Pfam Helicase conserved C-terminal domain 855 963 IPR001650 -
Mtr2g2840 1016 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 851 1016 IPR001650 -
Mtr2g2840 1016 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 97 1016 - -
Mtr2g2840 1016 Pfam Zinc finger, C3HC4 type (RING finger) 778 826 - -
Mtr2g2840 1016 Gene3D - 663 1016 IPR027417 -
Mtr2g2840 1016 MobiDBLite consensus disorder prediction 52 75 - -
Mtr2g2840 1016 Pfam HIRAN domain 110 214 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mtr2g2840 1016 MobiDBLite consensus disorder prediction 52 70 - -
Mtr2g2840 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 1010 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2840 Mtr-Chr2 41953157 41960593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2840 1 1016 RAD5 or RAD16-like Gene Family AT5G22750 69.797 0.0 1470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr2g2840 SNF2_N 1.9e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2840 K15505 - gmx:100794558 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2840 2 41953157 41960593 Mtr2g2840 2 41953157 41960593 ECH