Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2839 ATGAAGCTTCCGCGAAAATCCAAATCAACCGAACCACCACCACCACCGATGGCGCCACCATCAGGGGATCCTCCGTCGGAACCACCTAAACGGAGAGGTCGACCGCGGAAACAGAGAAGAAAAGAGAAAGAAACTGTAACCGTTGAATTGAAGAAGCCTATTGTATTGATTGGACGATACGTTTTGAAAGAGTTTTCAGAACGCGTTGATCAAATCGGAAAAGTTTTGAGTTACAAAATCGGTTTATACAGAGTCGACTACGAGAACGGTGATTTTGAGGATTTGGATAGTAGTGCTATTCGTAGAATTCTCATTGAGGATTGCGATTTTGACGACGATTTGATTCGACGGAAGAATGAATTGGATCAATCGTTGTTGAATAAGATTATTGAAGAATCGAGTGAATTGAATGTGGAAGATCAAGAGGAATCACAAGATGTGATGGACGATGATTCTAGGGATTCCTGTTCTGATGCTGAGACGCCGGTTGAATTGCCTGTGGCATTAGAATTGCCGCCACCGTTAGAGTTGCCGCCGTCTTCTGGAACTATTGGTGTGCCAGAGAATTTGGATGATTTCGTCGGTGCCCTTAACTGTCGGGTTCCTAATACGCTGCTTGATGCTGTTCATAATTCTTTAATGCGTGCTTTGAGACGTCATCTTGAACATCTTGCATTTGAGGGATCGAAGATTGCATCGAGATGCCTAAGGTGCAGTGAATGGAGCTTGCTTGATACATTGACGTGGCCTGTTTTCTTAATTGAATATTTAGCAGTTAATGGATACATTAAGGGGTCTGAGTGGAAAGGATTCTATGACGAGATTTTTAACGGCGATTATTATTCATTGCCTGCAAGTAGGAAGTTAGTAATATTGCAAATTCTTTGCGAGGATGTTTTGGAGTCTGAGGAGCTTAAAGCGGAAATGAACATGCGTGAAGAGTCAGAGGTCGGGAAGAATTCTGATGTTGAGGACAGTCCTCCTGTTAAAAATGGGCTGAAAAGAGTCCATCGACGATATGCCAAAACTACCGATTTCCAGGATGAAGAACCTACAAAGTTTGTTTCAAAATTAGATGCTGTGAACTTATCTGCTAATTCTGAGGACGAGGTTGACAAGAATGGAGATGAATGTCGCCTCTGTAGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGCTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATACCAGAAGGGCCATGGCATTGTCCAGAATGCAAAATAAATATGATTGGGCCAACAATTGCACGTGGAACATCTCTTAAAGGGGCTGAAATATTTGGAAATGATTTGTACGGGCAGCTTTTCCTGGGTACTTGCGACCACTTACTTGTGCTAAATTTCAACAGTTCCGAGTTTTGTCATAAGTACTACAATCAGAATGACATTCATAAAGTTATTCAAGTGCTTTATGCTTCTGTGCAACATAGACAAGTGTACTCCGGTATTTGCATGGCGATGTTACAGTACTGGAATATTCCAGAAAGCTCTTCACACCTATGTGTTCCAAACGGAACACATCTAAGCTCAAGTTCAAAGATAGATGAAAATGACCATAAAGGATTTACCTTGGGGAAAGCAGAATATGGTCCGGATTTTGTTGTTTCAACTATTAACCACCAGTCTGACATGAGTTGCCCAAATCCTGATAACAAGTCAACTGCATCCATTTCTTCCAAGTGCTCCTTGGTAAGCAACCAATTTATTAATTATGGGAATGCAAATGACACTAGTTTGCCATTGCAAACTAACGGTGACCAGACTGGCTTTGGAAAGTGCAAAGGAAATATCACTAGTAATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATAACTATATGCATGGTGATTTTTCTGCATCTGCTGCTGCTAATTTGGCCATTGTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTTTGACTTGAAGAAAGCTACACCTGACAACCCTAACTTGGTAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAATTCTGACAAGAAGCTTGGGGAGGTTATAAGAGAGAGGTGCAGCTGGTGCCTTTCTTGTAAAGCCATTGTTTCAAGCAAGAAAGGGTGCATGTTAAATCATGCTGCTATATATGCTATCAAAAGCGCTGCAAAAATACTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCCAGTATTTCAACATATGTTATATATTTGGAGGAAAGTTTACATGGTTTAGTAGATGGGCCCTTTCTTAGTGAAAACTATAGAAAGCTATGGCGGAAACAAATGGAAAGGGCCACATCATTTAGTAACATAAAGCCACTTTTACTTATATTTGAGGAGAACATTCGCACAATTGCTTTTTGTGGCGACTGGGTGAAGCTGACGGATGGGTGGTTGGTTGAATCTCTCACAATCCACAGTGATACATCCACCCTTGGAACAACACAGGAGCGTGCATCATGCGACAGATGTAGAAAACAATTACCAATCAAATATACAGTCAACAAATGCCGTGAAAACTTTGGCTGGTGGAATGGCAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAGTTCTTGGTCAGAAAAGCAGCTCGGCAAGGTGGTTTGAGGAAAATTTTGGGCATTGTCTATCCTGATGTCTCTGAAATTCCTAAAAGAAGCCGACAGCTGGTTTGGAGAGCTTCCGTTGAAATGAGTAGAAATGCATCACAGCTTGCACTTCAGGTTCGATATCTGGATTTTTACATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTGTCTGCTTTTAGAAATGCAAATATTTATGACAAAAAGTTTGCAAAGGGGAAAACATCCTATGCCATAGCTTTTGGGAGCCAAAAGCATATTTCTTCTCGGGTAAGGAAGATTGCTGAAATAGAAGAAGTGCCAGAAGGAGAGAAGTTATGGTTTTCTGAAACTCGCATTCCTTTATATCTGGTAAAAGAGTATGAAGTAAGAAACAAAAAAGAGCCATCTCATAAAGATAACTTGAATATCGCATCTCAATGGCACAAAAGGCAGTTGAATGCTATCTGGAAGGACATATTTTCTTACCTCACGTGCAAGAGAGACAATTTGGACTTGTTATCATGTTCTGTATGTAAGCAGTGCGTTTCATTTAGGAGTGCTCTCAAGTGCAGTGTATGTAAAGGTCATTGTCATGAGGGCTGTTCAATAGATTCAACATTCTCTACCTATACAGATGTTGAGTTCTTGACCATATGCAAACAATGTTATCATGCCAGATTACCTACTCAAAAAGAGACCATTAACAAATCTCCAAACAGTACCGTACTTTTAAAAGGGCGTTCTTTGACAATTTTGAAGGAACCGGTGCCTAAATTTGATGATGAAATACCGAGATCTACCAGGGAAAATGATTGTCGTCCCGACATGGAAAAAGTTGCTTCCCATTCCCCTCTTGAAACAAAAAGTAGTTGCCGAATATCCCCACTGGAAACTAAAAGCAGTGGCAAAAAATCCTCTTGGGGTATTATATGGAAAAAGAATAACAATGAAAATACAGGCATTGATTTCAGGCTAAAAAAAGTACTTCTGAAGCGACGTTCAAGCTTGCCTCAATTGGAACCCGTTTGTCACTTGTGCCATAAGCCATATAGATCTGATCTAATGTATATAGGCTGTGAATCATGTACCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTATGCTGGGCTTCAAATGTTGCAGATGTCGGAAGATAAAGTCACCCGTGTGTCCTTACTCTGATTTGGTGCGCAAGGAGCATGTTGTAGAGCAGTCTGGCTCACGGGCTTCCAAGAGGAAGCGTTCTGGAGCAGATTCTAGTTCTGAAACAGTAGCTGACCTTAGAGCATGTGAGCCTGCTAGTCCGGTTTTTCCCTCAGAGGCTGTTTCTAAAGAAGAGAACAACCCTTTTCCGTTTTCTCTTTCAAATGTTGAACTGATTACAAAACCCAAGTTAGAGTTAAATGCAGAGAAGTCACACTCACAGGCTTCGAAGAAAAACCATTCTGGAGAAGGTTCTGGTTCTGGAACACTGGCTGACACAAGAGCAAGTGAGTTTACTACTCCTATCTTTCCTGCTGAGGATGTTTTTAAACCAGAGAACAATCCACTGCCATTTTCTCTTTCAGATATCGAACTGATTACAGATCCCAAGTTAAAGTTAGATGCTGGGAAGTCACATTCACAGGCTTCCAAGAAAAACCATTCTGGAGCAGATTCTGGACCACTGGCTGACACAAGAGTAAGTGAGCCTGCTACTCCTATCTTTCCTACAAAGGATGTTTCTAAAACAGAGAACAATCCTCCGCCGTTTTCTCTTTCAGACGTTGAACTGATTACAGAACCCGAGTTAGATGCAGGCTTTGAGCGTAACACCATCTCTGGGTCAGGGCTTCAGAAAATACAAACGACAAGGCATTTTAAACCTGAGGGGGACAATAATAGCTCTTTTGGGGGTGAAGTTTGGCATGCTGAAATTTCAACACGAGATGAAATGGGTAATCTGCCTGCAGAGGTTTTATCACCTTTCATAGAACAGGACTTTGTCTTTGCTGACTGCAATCTTCTTAGTGACTTTGACATTGTTGATAATGAATACATGGACTTTGAATCAGAAACCCATTTCTCTTCTTCTGAATTTCTGCATCTAGATAGCAGTAGTCACTTTGAGGAAGCTGACACGTTTGGGGACTTGTCAGGGTTTGTAAAAAATTCTTGCACGCTAGGTGTTCTTGAAGAATGTGCAACTACTAGTTTACAGAACAATCAGAGTCCTACAATTTCATCAAATGGTAATGTTCACAATTGTTGGCAATGTTCACAAACAGAACCAGCCCCCGATCTCTCTTGTCAGATTTGTCGGATGTGGATTCACAGTAATTGCTCACCCTGGATTGAATCATCATCTAGGCTTGGAGATTGGAAGTGCGGGAATTGCAGGGAATGGCAATAG 5100 0.4129 MKLPRKSKSTEPPPPPMAPPSGDPPSEPPKRRGRPRKQRRKEKETVTVELKKPIVLIGRYVLKEFSERVDQIGKVLSYKIGLYRVDYENGDFEDLDSSAIRRILIEDCDFDDDLIRRKNELDQSLLNKIIEESSELNVEDQEESQDVMDDDSRDSCSDAETPVELPVALELPPPLELPPSSGTIGVPENLDDFVGALNCRVPNTLLDAVHNSLMRALRRHLEHLAFEGSKIASRCLRCSEWSLLDTLTWPVFLIEYLAVNGYIKGSEWKGFYDEIFNGDYYSLPASRKLVILQILCEDVLESEELKAEMNMREESEVGKNSDVEDSPPVKNGLKRVHRRYAKTTDFQDEEPTKFVSKLDAVNLSANSEDEVDKNGDECRLCSMDGTLLCCDGCPAAYHSRCIGVMKMYIPEGPWHCPECKINMIGPTIARGTSLKGAEIFGNDLYGQLFLGTCDHLLVLNFNSSEFCHKYYNQNDIHKVIQVLYASVQHRQVYSGICMAMLQYWNIPESSSHLCVPNGTHLSSSSKIDENDHKGFTLGKAEYGPDFVVSTINHQSDMSCPNPDNKSTASISSKCSLVSNQFINYGNANDTSLPLQTNGDQTGFGKCKGNITSNFVYMGCSYKPQSYINNYMHGDFSASAAANLAIVSSEDSRSEGHVFDLKKATPDNPNLVAKAFSLTASRFFWPNSDKKLGEVIRERCSWCLSCKAIVSSKKGCMLNHAAIYAIKSAAKILSGLAPVRSGEGISPSISTYVIYLEESLHGLVDGPFLSENYRKLWRKQMERATSFSNIKPLLLIFEENIRTIAFCGDWVKLTDGWLVESLTIHSDTSTLGTTQERASCDRCRKQLPIKYTVNKCRENFGWWNGKFTKSVFQKAALPKFLVRKAARQGGLRKILGIVYPDVSEIPKRSRQLVWRASVEMSRNASQLALQVRYLDFYIRWIDLIRPEYNLQDGKGQDTEVSAFRNANIYDKKFAKGKTSYAIAFGSQKHISSRVRKIAEIEEVPEGEKLWFSETRIPLYLVKEYEVRNKKEPSHKDNLNIASQWHKRQLNAIWKDIFSYLTCKRDNLDLLSCSVCKQCVSFRSALKCSVCKGHCHEGCSIDSTFSTYTDVEFLTICKQCYHARLPTQKETINKSPNSTVLLKGRSLTILKEPVPKFDDEIPRSTRENDCRPDMEKVASHSPLETKSSCRISPLETKSSGKKSSWGIIWKKNNNENTGIDFRLKKVLLKRRSSLPQLEPVCHLCHKPYRSDLMYIGCESCTRWYHAEALELEESKIFSMLGFKCCRCRKIKSPVCPYSDLVRKEHVVEQSGSRASKRKRSGADSSSETVADLRACEPASPVFPSEAVSKEENNPFPFSLSNVELITKPKLELNAEKSHSQASKKNHSGEGSGSGTLADTRASEFTTPIFPAEDVFKPENNPLPFSLSDIELITDPKLKLDAGKSHSQASKKNHSGADSGPLADTRVSEPATPIFPTKDVSKTENNPPPFSLSDVELITEPELDAGFERNTISGSGLQKIQTTRHFKPEGDNNSSFGGEVWHAEISTRDEMGNLPAEVLSPFIEQDFVFADCNLLSDFDIVDNEYMDFESETHFSSSEFLHLDSSSHFEEADTFGDLSGFVKNSCTLGVLEECATTSLQNNQSPTISSNGNVHNCWQCSQTEPAPDLSCQICRMWIHSNCSPWIESSSRLGDWKCGNCREWQ* 1700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1372 1396 - -
Mtr2g2839 1699 CDD PHD_SF 1238 1285 - -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1304 1328 - -
Mtr2g2839 1699 PANTHER PHD FINGER FAMILY PROTEIN 1372 1696 - -
Mtr2g2839 1699 PANTHER PHD FINGER FAMILY PROTEIN 28 189 - -
Mtr2g2839 1699 PANTHER PHD FINGER FAMILY PROTEIN 190 1353 - -
Mtr2g2839 1699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 425 IPR013083 -
Mtr2g2839 1699 Pfam PHD-finger 378 420 IPR019787 -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1 45 - -
Mtr2g2839 1699 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 190 1353 - -
Mtr2g2839 1699 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 28 189 - -
Mtr2g2839 1699 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1372 1696 - -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1304 1322 - -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1382 1396 - -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 310 330 - -
Mtr2g2839 1699 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 267 310 IPR028942 -
Mtr2g2839 1699 SUPERFAMILY FYVE/PHD zinc finger 1645 1696 IPR011011 -
Mtr2g2839 1699 SMART PHD_3 1238 1286 IPR001965 -
Mtr2g2839 1699 SMART PHD_3 1651 1696 IPR001965 -
Mtr2g2839 1699 SMART PHD_3 1070 1119 IPR001965 -
Mtr2g2839 1699 SMART PHD_3 377 420 IPR001965 -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 1439 1486 - -
Mtr2g2839 1699 CDD PHD_SF 1652 1695 - -
Mtr2g2839 1699 SUPERFAMILY FYVE/PHD zinc finger 1236 1292 IPR011011 -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 8 26 - -
Mtr2g2839 1699 ProSiteProfiles Zinc finger PHD-type profile. 375 422 IPR019787 -
Mtr2g2839 1699 SUPERFAMILY FYVE/PHD zinc finger 363 423 IPR011011 -
Mtr2g2839 1699 ProSitePatterns Zinc finger PHD-type signature. 378 419 IPR019786 -
Mtr2g2839 1699 MobiDBLite consensus disorder prediction 136 159 - -
Mtr2g2839 1699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1234 1292 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2839 Mtr-Chr2 41930057 41939311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2839 1432 1699 PHD Transcription Factor Family AT5G35210 31.206 1.88e-19 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr2g2839 PHD 7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2839 - - mtr:MTR_2g084620 3326.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2839 2 41930057 41939311 Mtr2g2839 2 41930057 41939311 ECH