Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2838 ATGGCGCCACCATCGGGGGATTTTGCGTCGGAACCACCAAAACGGAGAGGTCGACCGCGGAAACCGAGAAGAAAAGGGAAAGAAACTGTAACCGTTGAATTGAAGAAGCCGATTGTATTGATTGGACGATGTGTTTTGAAAGAGTTTTCAGAAACCGTTCAAATCGGAAAAGTTATGAGTTATGAAATCGGTTTTTACAGAGTGGAGTATGAGAACGGTGTTTTTGAGGATTTGGATAGTAGCGCTATTCGTAGAATTCTCATTGAGGATTGCGATTTCGACGATGATTTGATTCGAAGAAAGAATGAATTGGAACAATCGTTGTTGAATAAGATTATTGAAGAATCTAGAGAATTGAATGCGGAAGATCAAGAGGATTCACGAGATGTTATGGACGATGATTCTAGGGATTTGTGTTCGGATGCTGAGATACCGGTTGAATTGCTGGTGGCATCAGAATTGTCGCCGCCTTTGGAGTTACCGCCGTCTTCAGGAACTATTGGTGTGCCGGAGAAGTATGTTTCGTACTTGTTTTCGGTATATGGATTCTTACGATCATTCAGTATTCGATTGTTTCTTTATCCGTTTAGTTTGGATGATTTCGTCGGGGCTCTTAACTGTCGAGTTCCAAATACGTTGGTTGATGCTGTTCATAATTCTTTAATGCGTGCTCTGAGACGTCATCTTGAACATCTTGCATCTGAGGGATCAACGGTTGCATCTCAATGCCTTAGGTGCAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTGAATATTTAGCAGTTAATGGATACATTAAGGGGTCTGAGTGGAATGGATTCTACAACGAGATTTTTAACGGCGATTATTACTCATTGCCTGCAAGTAGGAAGTTAGTAATATTGCAAATTCTTTGCGAGAATGTTTTGGAGTCTGAGGAGCTTAAAGCTGAAATGAACATGCGTAAAGCGTCGGAGCTCGGGAAGAATTATGATGCTGAGGACAGTCCTATTGCTGAAAATGGACCTAAAAGAGTCCATCGACGATATGCCAAAACTACCAATTGCCAGGATGAAGAACCCACAAAGTTTGTTTCAAAATTAGATGCTGTGAACTTACCTGCTAATTCTGAGGACGAGGTTGACAAGAATGGTGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCCGCTGCTTATCATTCAAGGTGTATTGGTGTGTATAAGATGTATATACCAGAAGGGCCATGGCATTGTCCAGAATGCAAAATAAATATGATTGGGCCAACAATTGCACCTGGAACATCTCTTAAAGGGGCTGAAACATTTGGTAATGATTTGTACGGGCAGCTTTTCATTGGTACTTGCGACCACTTACTTGTGCTAAATGTCAACAGTGCCGAGTTTTGTCATAAGTACTACAATCAGAATGACGTTCGTAAAGTTATTCAAGTGCTTTATGATTCTGTGCAACATAGACCTTTGTACTCCAGTATTTGCATGGCAGTGTTACAATACTGGAATATTCCAGAAAGCTCTTCACACCTATGTGTTCCAAACGGAAATATCACTAGTGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATAAATATATGAATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGACTTGAAGAAAGCTACACCTGACAACCCTTCCTTGGTAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAATTCTGACAAGAAGCTTGGGGAGGTTATAAGAGAGAGGTGTTGCTGGTGCCTTTCTTGTAAATCCTCTGTTTCGAGCAAGAAAGGGTGCATGTTAAATCATGCTGCTATAACTGCTACCAAAAGCGCCGCCAAAATACTTTCCGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTAGCATTTCAGCGTATGTCATATATTTGGAGGAAAGCTTAAATGGTTTAGTAGATGGGCCCTTTCGTAGTGAAAACTGTAGAAAGCTATGGCGTAAACAAATGGAAAGGGTCACTTCATTTAGTAACATAAAGTCACTTTTACTCAAACTTGAGGAGAACATTCGCACAATCGCTTTTTCTGGTGACTGGGTGAATCCCACGGATGAGTGGTTGGTTGAATCTCTCACAATCCACAGTGATGCATCTACTCTTGGAACAACACAGGAACGTGCATCATGCGGCAGATGTAGAAAACAATTACCTATCAAATATACAGCCAACAAATGCCGTGAAAACTTTGGCTGGTTGAATGACAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTCATGGTCAGAAAAGCAGCTAGGCAAGGAGGTTTGAGGAAAATTTTGGGCATTGTCTATCCTGATGTCTCTGAAATTCCTAAAAGAAGCCGACAGCTGGTTTGGAGAGCTGCAGTTGAAATGAGTAGAAATGCATCACAGCTTGCACTTCAGGTTCGATATCTGGATTTTTACATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAAATATTTATGACAAAAAGTTTGCAAAGGGGAAAACATCCTATGCCATAGCTTTTGGGAGCCAAAAGATTATTCCTTCTCGGGTAAGGAAGATCGCTGAAATAGAAGAAGTGCCAGAAGGAGAGAAGTTATGGTTTTCTGAAAAACGCATTCCTTTATATCTGGTAAAAGAGTATGAAGTAAGAAACAAAAAAGAGCCATCTCATAAAGATAACTTGAATATCGCATCTCAATGGCACAAAAAGCGGTTGAATGCTATCTGGAAGGACATATTTTCTTACCTCACGTGCAAGAGAGACAATTTGGAACTGTTATCATGTTCCGTATGTGAGCAGTGTGTTTCATTTAGGAGTGCTCTCAAGTGCAGTGTATGTCAAGGTCATTGTCACGAGGGCTGTTTAATAGATTCAACATTCTCTACCTATACAAATATTGAGTTCTTGACCACATGCAAACAATGTTATCAAAAAGAGACCGTTAACAAATCTTCAAACAGTACCTTACTTTTAAATGGGGGCTCTTTGACAATTTTGATGGAACCAGTGCCTAAATGTGATGATCAAATACCGAGATCTACCAGGGAAAATGATTGTCGTCCCGACATGAAAAAAGTTGCTTCCCATTCCCCTCTTGAAACAAAAAGCAGTGGCAAAAAATCCTCTTGGGGTATTGTATGGAAAAAGAATAACAATGAAAATACAGGCATTGATTTCAGGCTAAAGAAAGTACTTCTGAAGGGACGTTCAAGCTTGCCTCAATTTGAACCTGTTTGTCACTTGTGCCATAAGCGATATAGATCTGATCTAATGTATATAGGCTGTGAAACATGTACCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTGGGCTTCAAATGTTGCAGATGTCGGAAGATAAAGTCACCCGTGTGTCCTTACTCTGATTTGGTGTGCAAGGAGCAAGTTGGAGAGCAGTCAGGCTCACGGGCTTCCAAGAGGAAGCATTCTGGAGCAGGTTCTAGTTCTGAAATACTGGCTGACATTAGAGCATGTGAGCCTGTTAATCCGGTTTTTCCCTCAGAGGCTGTTTCTAAACAAGAGAACAACCCTTTTCCGTATTCTCTTTCAAATGTTGAACTGATTACAGAACCCCAGTTAGAGTTAGATGCAGAGAAGTCACACTCACAGGCTTCCAAGAAGAACCATTCTGGAGAAGATTTTGGTTCTGAAACACTGACTGACACAAGAGAAAATGAGTTTCCTGCTGAGGATGTTTCTATACCAGAGAACAATCCTCCACCGTTTCCTTTTTCAGATGCTGAACTGATTACAGAACCCGAGTTAGATGCAGGCATTGAGCGTAACACCATCTCTGGGTCAGGGCTTCAGAAAATACCAACGACGAGGCATTTTAAACCTGAGGGGGACAATAATAGCTCTTCTGGGGGTGAAGTTCGGCATGCTGAAATTTCAACACGGGATGAAATGGGTAATATGCCCGCAGAGTTTTTATCACCTTTCGTAGAACATGACTTTGTCTTCGCTGACTACAATCTTCTGAGTGACTTTGAAAGTGTTGATAATGAATTCATTGACATCGAATCAGAAACTCACCTCTCTTCTGCTGAACTTTTGCATCTAGATAGCAGTAGTCACTTTGAGGAAGCTGACTTGTTTGTGGACTTGTCAGGGTTTGTAAATAATTCTTGCACACTAGGTGTTCCTGAAGAATGTGCAACTACTAGTTTACAGAACAACCTGAGACCTACAACTTCATCAAATGTTCACAATTGTTGGCAATGTTCACAAACAGAACCAGCCCCCGATCTCTCTTGTCAGATTTGTCGGATGTGGATTCATAGCAAGTGCTCACCCTGGATGGAATCATCATCTAGGCTTGGAGAGTGGAAGTGCGGGAATTGCAGGGAATGGCAATAA 4587 0.4133 MAPPSGDFASEPPKRRGRPRKPRRKGKETVTVELKKPIVLIGRCVLKEFSETVQIGKVMSYEIGFYRVEYENGVFEDLDSSAIRRILIEDCDFDDDLIRRKNELEQSLLNKIIEESRELNAEDQEDSRDVMDDDSRDLCSDAEIPVELLVASELSPPLELPPSSGTIGVPEKYVSYLFSVYGFLRSFSIRLFLYPFSLDDFVGALNCRVPNTLVDAVHNSLMRALRRHLEHLASEGSTVASQCLRCSEWSLLDTLTWPVFLIEYLAVNGYIKGSEWNGFYNEIFNGDYYSLPASRKLVILQILCENVLESEELKAEMNMRKASELGKNYDAEDSPIAENGPKRVHRRYAKTTNCQDEEPTKFVSKLDAVNLPANSEDEVDKNGDECRLCGMDGTLLCCDGCPAAYHSRCIGVYKMYIPEGPWHCPECKINMIGPTIAPGTSLKGAETFGNDLYGQLFIGTCDHLLVLNVNSAEFCHKYYNQNDVRKVIQVLYDSVQHRPLYSSICMAVLQYWNIPESSSHLCVPNGNITSDFVYMGCSYKPQSYINKYMNGDFAASAAAKLAILSSEDSRSEGHVSDLKKATPDNPSLVAKAFSLTASRFFWPNSDKKLGEVIRERCCWCLSCKSSVSSKKGCMLNHAAITATKSAAKILSGLAPVRSGEGISPSISAYVIYLEESLNGLVDGPFRSENCRKLWRKQMERVTSFSNIKSLLLKLEENIRTIAFSGDWVNPTDEWLVESLTIHSDASTLGTTQERASCGRCRKQLPIKYTANKCRENFGWLNDKFTKSVFQKAALPKFMVRKAARQGGLRKILGIVYPDVSEIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYIRWIDLIRPEYNLQDGKGQDTEVSAFRNANIYDKKFAKGKTSYAIAFGSQKIIPSRVRKIAEIEEVPEGEKLWFSEKRIPLYLVKEYEVRNKKEPSHKDNLNIASQWHKKRLNAIWKDIFSYLTCKRDNLELLSCSVCEQCVSFRSALKCSVCQGHCHEGCLIDSTFSTYTNIEFLTTCKQCYQKETVNKSSNSTLLLNGGSLTILMEPVPKCDDQIPRSTRENDCRPDMKKVASHSPLETKSSGKKSSWGIVWKKNNNENTGIDFRLKKVLLKGRSSLPQFEPVCHLCHKRYRSDLMYIGCETCTRWYHAEALELEESKIFSVLGFKCCRCRKIKSPVCPYSDLVCKEQVGEQSGSRASKRKHSGAGSSSEILADIRACEPVNPVFPSEAVSKQENNPFPYSLSNVELITEPQLELDAEKSHSQASKKNHSGEDFGSETLTDTRENEFPAEDVSIPENNPPPFPFSDAELITEPELDAGIERNTISGSGLQKIPTTRHFKPEGDNNSSSGGEVRHAEISTRDEMGNMPAEFLSPFVEHDFVFADYNLLSDFESVDNEFIDIESETHLSSAELLHLDSSSHFEEADLFVDLSGFVNNSCTLGVPEECATTSLQNNLRPTTSSNVHNCWQCSQTEPAPDLSCQICRMWIHSKCSPWMESSSRLGEWKCGNCREWQ* 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2838 1528 ProSitePatterns Zinc finger PHD-type signature. 386 427 IPR019786 -
Mtr2g2838 1528 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 285 318 IPR028942 -
Mtr2g2838 1528 ProSiteProfiles Zinc finger PHD-type profile. 383 430 IPR019787 -
Mtr2g2838 1528 PANTHER PHD FINGER FAMILY PROTEIN 526 1525 - -
Mtr2g2838 1528 PANTHER PHD FINGER FAMILY PROTEIN 12 527 - -
Mtr2g2838 1528 ProSiteProfiles DDT domain profile. 171 231 IPR018501 -
Mtr2g2838 1528 SUPERFAMILY FYVE/PHD zinc finger 1469 1526 IPR011011 -
Mtr2g2838 1528 CDD PHD_SF 1481 1524 - -
Mtr2g2838 1528 Pfam DDT domain 174 228 IPR018501 -
Mtr2g2838 1528 SUPERFAMILY FYVE/PHD zinc finger 1134 1193 IPR011011 -
Mtr2g2838 1528 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 526 1525 - -
Mtr2g2838 1528 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 12 527 - -
Mtr2g2838 1528 SMART testlast3 171 231 IPR018501 -
Mtr2g2838 1528 SMART PHD_3 988 1037 IPR001965 -
Mtr2g2838 1528 SMART PHD_3 385 428 IPR001965 -
Mtr2g2838 1528 SMART PHD_3 1480 1525 IPR001965 -
Mtr2g2838 1528 SMART PHD_3 1139 1187 IPR001965 -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1 28 - -
Mtr2g2838 1528 Pfam PHD-finger 386 428 IPR019787 -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1073 1090 - -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1073 1100 - -
Mtr2g2838 1528 CDD PHD_SF 1139 1186 - -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1341 1369 - -
Mtr2g2838 1528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 432 IPR013083 -
Mtr2g2838 1528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1135 1193 IPR013083 -
Mtr2g2838 1528 SUPERFAMILY FYVE/PHD zinc finger 371 431 IPR011011 -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1272 1296 - -
Mtr2g2838 1528 MobiDBLite consensus disorder prediction 1355 1369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2838 Mtr-Chr2 41922642 41929888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2838 261 1527 EF-hand Containing Proteins AT5G22760 38.982 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mtr2g2838 DDT 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2838 - - mtr:MTR_2g084615 3040.75