Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2823 ATGGCTGTTGCTGGAGTGCACAATGCAGCTGTGTTGGATACTAATTTCCTGAGGGAGTCTCATTCTCGGTCACCACGGAGGCAAGAAGATGGAGGAAGGGGAGGTGGACGGTCATCTTCGCTTTTGCAAATGTGGCGAGAGATTGAAGATGAGCATATGGTGAGACAGGTTCAAGGAAGACCGGATGAAGTATTAGTTCAACAAAGGAGTGAGGGGTTGGTTGTAGACCCATCACAGGAAGATGCAGGTTTAGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAAAATGGGTCTCAATATGAACAGGATCAGGAGGAGTTGAACAGTTCTATTCGTGAAAACTCTGCTGATATTGGAGAGGTTGGGAGGGAAAGAGTGAGGAAAATTTTCAGGGGATGGATGAGTAATGGTGGTTCTAGGGATCGTGCATCAAATATTAATCGAGGGAATAGTGGTTCGAGGGGTGAATTGCTTGGGGGAACTGACCAGGAAAGAGTTAGTATCGTAAGGGAATGGGTAGAGACGAGTAGCCGGTTGCGAGGTGTTTCTGTTGGGGAAAATAGGGAAGAACAACCTGCTGAATTTGGTAACCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGAATCCGTAAATTACGTGGTCGGCAGGTTTTGCTTGATATGGTTAAGAAGGCTGTGATGGAGAGGCAAAGAGAGGTTCAGGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCCATTGATAGTAACCGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTACTGAGACAAAAACAGACTGTATCATGTCTAAGTTTGATTGATGGGTTAAGGCTACTGCTGCTAGAAGATCGTTTTGAAATTAATATTGTTACTGCAAAGTCGACATGGGAAGGATTTTCGTTTAGAAAGGACAATTTAGGTTATGGTCAAGCAGCAAGCAACCTATCTGATACCTCATCTGACGGTGATATTGATGTCGATAGAATTGAACAAACTGGAGCCACAAGTTCACAAGTAGTCACCTCTGCACATTCCGAACAATCAAAGCCTAATAATAAGGGAAGTGATAGACTTGGGATGTCATGTGCTCATGATGAAGAAGAAGAAACAGGAATTTGTGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCAATGCACAAAATGTTGACACAATACCATCCGAAGATACTGGTAACAACCTTACCCAACAAAGCTTGCAAATTGAAGTTACGGAGCATAGCAATCTGCAAGAACAAGAACAAGAACCAAGTGATATACATACTGAGGAGTCTATGCGGGGTGATATAACTGGTGAACAAAGCAATTTATCAAATCACAACAATCGTGCAGAGGGCAATATCATTGATAATGTAGATTTGGTTGAATCTGTTGCTCTAGAAAGACAGCAACATGAAGAAATTATTATTGAAAATGAAGGAAGTGACTGGCATCAAACTAACGTTGAGTGGAGGGATAGTACTCAGGAAAGTGTGGATGATAATCAGCTCAGTAGCACATCAAATGAATGGCCTCAAAACATCTTGGGAAATGATGATGGAGAAAATTCTCGTCTGCAAGAGCAAGTAGCTGCCTCCGAAGTGTGGCAAGAAGATGGCAGCTTTCAAGAAGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGGAGCAACTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAACGTGTACAGTGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTACGCAGCAGTTTTCGTGAAAGTCTTGACCAGCTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAAGAGCTGCAAGAAACAACCCCGTCTTCTTCCTCAACAGAACAAGACCTGGAGCAGCAGAGAAGGGATCAGATTGTTGATACAGAGGACATTGTCAATAATTCACTTAACCTGCCTTTACCACCACCACCTCCCCCTCTGCCTCCTCTATGGGATCGACACTCACGTCATGACAATTGGACACAGCAGAACGGCATAAACAATCAGCGCCGAGGAACTGTGAATTCATTTGCAGGACACAACCGATTTCCTTTAGCTGATGACTGGGATAATATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTAGAGGCTTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCTCTTAATCGCTCAACTGGTTCATCAGGAGTACATGACCATGTTTCGCCAGATGAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGCGAAGGCAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATCAATTGCTTGATAGTAGAAAAAAGTGTCCAATGTGTCGAGCACCAGTGGTGGAAGTGATTCGTGCTTATTCTATATAA 2583 0.4321 MAVAGVHNAAVLDTNFLRESHSRSPRRQEDGGRGGGRSSSLLQMWREIEDEHMVRQVQGRPDEVLVQQRSEGLVVDPSQEDAGLGENESETWSQSQSQNGSQYEQDQEELNSSIRENSADIGEVGRERVRKIFRGWMSNGGSRDRASNINRGNSGSRGELLGGTDQERVSIVREWVETSSRLRGVSVGENREEQPAEFGNQNEGQSEHISRRRIRKLRGRQVLLDMVKKAVMERQREVQELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDSNRSTSIAESELGLLRQKQTVSCLSLIDGLRLLLLEDRFEINIVTAKSTWEGFSFRKDNLGYGQAASNLSDTSSDGDIDVDRIEQTGATSSQVVTSAHSEQSKPNNKGSDRLGMSCAHDEEEETGICESSSNISVERRDGNAQNVDTIPSEDTGNNLTQQSLQIEVTEHSNLQEQEQEPSDIHTEESMRGDITGEQSNLSNHNNRAEGNIIDNVDLVESVALERQQHEEIIIENEGSDWHQTNVEWRDSTQESVDDNQLSSTSNEWPQNILGNDDGENSRLQEQVAASEVWQEDGSFQEAVEIWLGGPSDNGATPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRHDNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPDESKWECVRKGLCCICCEGSIDCLLYRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2823 860 SUPERFAMILY RING/U-box 808 854 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 141 160 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 360 427 - -
Mtr2g2823 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 859 IPR013083 -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 84 118 - -
Mtr2g2823 860 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
Mtr2g2823 860 CDD mRING-HC-C3HC5_NEU1 809 848 - -
Mtr2g2823 860 PANTHER PROTEIN, PUTATIVE-RELATED 1 860 - -
Mtr2g2823 860 Coils Coil 738 765 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 137 162 - -
Mtr2g2823 860 Coils Coil 224 244 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 513 542 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 19 33 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 186 211 - -
Mtr2g2823 860 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 16 39 - -
Mtr2g2823 860 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 860 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 360 381 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 399 427 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 646 667 - -
Mtr2g2823 860 MobiDBLite consensus disorder prediction 70 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2823 Mtr-Chr2 41727550 41734176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2823 809 855 C3H Transcription Factor Family AT3G06140 40.426 4.89e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2823 - - vun:114184870 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2823 2 41727550 41734176 Mtr2g2823 2 41727550 41734176 ECH
Mtr2g2823 2 41727550 41734176 Mtr4g1650 4 28876522 28883866 ECH
Mtr2g2823 2 41727550 41734176 Mtr4g1650 4 28876522 28883866 PCT