Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2820 ATGGCGAAAGGAACCGATTCAGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAACGAGAGTTTGCGTTTGCAATGAAGGCTCAATCTGAGATCGATGGTTCGTTGGGTCGAACCAGGGGTGGTAGTAAGAACCGGAATGAGGCTCCGGTTCAGGAAACGCCGGTTGGGAAAAGGGTAAAAAAAACCGGTTTAGATGATGTTGTTATGAGTGAGGAAGAGGCTAAGAGTGATGTTGTGGATCTTGTTAGCGATGAAGAGGTTAGGAATGTTGAAAGGGAAAATGGGTTTTTGTCAAAATCTGATATTGATGTGAAGAGTGATGTGGTTGATGAAGAAACCCTTTTGAAGGAAGAAGAAAAAGTTGTGATTGTGGATGAAATTGAAATGGAAACTGTTTGTGATATCAAAGATGAAACCCTAGAGGATAAGGGTACCCTTTTGGAGGAAAAGGGTAATGTTGGTGGGAAAAGGAAAAAGAGGGTGTCGTTAGAAAAACCAGTTAGGAGGTTTACAAGATCAGCATTGAAGGAAAAAGATGAAGAAATTAAGGATAATGCTGTTGTTGTTGATGTCGATAATGTTGTTGAAAGCGAAAATGGGGTTTCTGAGGTTTCGCCGGTTATGGTGACTCCGACTCCGATGAAATTTGGCAAGTCTGGTAAGAGGTTTCCTGTCAAGCTGAAGGATCTTCTGGCTACTGGGATTCTGGATGGATTGAAAGTGAGATATGTGAAGGGACAAAAGGCACGTAAACCAGGAGAAAAGGATTTACAAGGTGTGATTAAAGATGCTGGGATTTTGTGCTCTTGTGGGAGTTGTAAGGGGAATCAGGTTGTCTCGCCGTCTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCTCCGGAGTATACTTACCTTGAGAATGGAAAACTCCTTCGGGATGTCATGAATGCCTGTTCAAGTCTTCCGTTGGACACATTGGATAAAGTGGTCCAAATGGTCCTGGGTGATTTCACTATGCAGAATTCTAATATCTGTTTCAATTGCCGAGGGTCAATTTCTGAATCTAACAAGGGTGAGTCAAAACTAGTATGCAATCCATGCATGGAGTTGAAAGAGACTCAAACTAGCCAACTTCAAACAGCAGCAACACGTAGTGAAAGTATTACCCCAGTAGTTCAACCCAGATCACTAGAAGCGGTAGTACTTCCAGAGTCATTAAATACTGAGACGGTGGTTCCGAAGTCATCAAACACTGAGATGGTGGTTCCAAACTCATCAAACACAAATATGGTTCGAGAGACATCATCCACAAATATGATTCCAAAGGCATTGAATAATGGCATGAAGCAGAGTGCATCTGGCAAGAGTCGGGGAAAAATAACTAGAAAGGATCTACGGTTGCATAAGTTGGTATTTGAAGAAGACGTGTTAGAAGATGGAACTGAAGTTGCTTACTATTCTCATGGAAAGAAACTATTAGTCGGTTACAAAAAGGGATATGGAATCTTTTGTAGCTGTTGCAGTACAGAGGTTAGCGCCTCTACGTTTGAAGCTCATGCTGGATGGTCATCTCGACGCAAGCCTTACCTGCATATATATACATCTAATGGAGTCTCACTACATGAGCTGTCCCTCTCTCTATCAAAAGATCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTGCCATGCATTCCCTGTGGTACTTGGTATTGTAAATATTGCCAGACTAATTTCCAGATGGAGAGTAATGCACAACGTAATGCGAATGCTCTGGCAGCTGGAAGGATTGAAGGCATTGATCCTTTAGAACAGATAAACCGACGATGCATTCGCATTGTCAAAAGTGTAGCTGTCGACCATGGGGGATGTGCCTTGTGTGGATGTCATGATTTTGTTAAAACATTTGGTCCTCGAACAGTAATTATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTTTGAAGGAGCACAGCATGCAGAATTTAAAGGAGTTGCCTGAAGGGGATTGGTTTTGCAGCACAAGTTGCAGTCATATTCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATAGTCTCCCAGATTCTATTCTAAGTTTGATAAAAAAGAAGCATGACACTGGCGTTGAAGGGAAAGGTGCAGACACTGGCGTTGAAGGGAAAGGTGCTGGCAATATCATTGAAGAGAAAGGTGGAGACAGTGTCGAAGAGAAAAGTAGAGACGCTGTTGAAGAGAAAGGTGCAGACACCGGCCTTGAAGAGAAAATTGCAGACACCGACTTTGAAGAGAAAGCTGTAGACACCGGCGTTGAAGAGAAAGCTGCAGACACCGGCGTTGAAGAGAAATGTGGAGACACTGGTGGTGTTGAGAAAGATGTAGACACTGGTGTTGAAGTGAAAAGTGTAGAAACTGGGGTTGAAGAGAAAGGTGTAGTCACTGCTGTTGATCCTGAAATTAAATGGAGGGTTTTGAACTGGAAGTTAGTTGCCTCAGGTGAAAATAAGCAATTGTCTGATGAATATAGGCAAGTGCTTTCGAAGGCTGTTGCCATCTTCCATGAGAGATTTGATCCTATAGTTGATTCGTCTTCTGGCCGTGATTTCATTCCGACAATGCTGTTTGGAAAGAACATCCGCGGGCAAGATTTTTCCGGAATGTACTGTGCAGTGCTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTCCGTGTTTTTGGACCAGAAGTCGCAGAGCTTCCTTTGGTGGCGACAGTTTCTGAGTACCAAGGACAGGGTTACTTTCAATGCTTGTTTTCTTGCATTGAGAGACTACTTCAATCTCTAAGCGTGAAAAACCTTGTCCTACCGGCTGCCGATGAAGCTGAATCAATATGGACTAACAAATTTGGGTTTACAAAGCTAGAGCACGATGAGATCAACAATTACAAGAAGTTTTATCATATGATGATCTTTCAAGGGACCTCAGTACTACAGAGGCCTGTTCCGACACTACCAAGTACTTCTCAGGAGATTTTGTAA 3105 0.4267 MAKGTDSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEAPVQETPVGKRVKKTGLDDVVMSEEEAKSDVVDLVSDEEVRNVERENGFLSKSDIDVKSDVVDEETLLKEEEKVVIVDEIEMETVCDIKDETLEDKGTLLEEKGNVGGKRKKRVSLEKPVRRFTRSALKEKDEEIKDNAVVVDVDNVVESENGVSEVSPVMVTPTPMKFGKSGKRFPVKLKDLLATGILDGLKVRYVKGQKARKPGEKDLQGVIKDAGILCSCGSCKGNQVVSPSVFELHAGSANKRPPEYTYLENGKLLRDVMNACSSLPLDTLDKVVQMVLGDFTMQNSNICFNCRGSISESNKGESKLVCNPCMELKETQTSQLQTAATRSESITPVVQPRSLEAVVLPESLNTETVVPKSSNTEMVVPNSSNTNMVRETSSTNMIPKALNNGMKQSASGKSRGKITRKDLRLHKLVFEEDVLEDGTEVAYYSHGKKLLVGYKKGYGIFCSCCSTEVSASTFEAHAGWSSRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPCGTWYCKYCQTNFQMESNAQRNANALAAGRIEGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKTFGPRTVIICDQCEKEYHVGCLKEHSMQNLKELPEGDWFCSTSCSHIHSSLVNLVASGENSLPDSILSLIKKKHDTGVEGKGADTGVEGKGAGNIIEEKGGDSVEEKSRDAVEEKGADTGLEEKIADTDFEEKAVDTGVEEKAADTGVEEKCGDTGGVEKDVDTGVEVKSVETGVEEKGVVTAVDPEIKWRVLNWKLVASGENKQLSDEYRQVLSKAVAIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFSGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATVSEYQGQGYFQCLFSCIERLLQSLSVKNLVLPAADEAESIWTNKFGFTKLEHDEINNYKKFYHMMIFQGTSVLQRPVPTLPSTSQEIL* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2820 1034 ProSitePatterns Zinc finger PHD-type signature. 561 600 IPR019786 -
Mtr2g2820 1034 SUPERFAMILY FYVE/PHD zinc finger 645 701 IPR011011 -
Mtr2g2820 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 629 IPR013083 -
Mtr2g2820 1034 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Mtr2g2820 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 706 IPR013083 -
Mtr2g2820 1034 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Mtr2g2820 1034 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 998 IPR016181 -
Mtr2g2820 1034 MobiDBLite consensus disorder prediction 737 768 - -
Mtr2g2820 1034 Gene3D - 851 1021 - -
Mtr2g2820 1034 MobiDBLite consensus disorder prediction 35 57 - -
Mtr2g2820 1034 Pfam Tify domain binding domain 494 542 IPR032308 -
Mtr2g2820 1034 Pfam Tify domain binding domain 262 317 IPR032308 -
Mtr2g2820 1034 ProSiteProfiles Zinc finger PHD-type profile. 558 603 IPR019787 -
Mtr2g2820 1034 CDD PHD1_AIRE 560 600 - -
Mtr2g2820 1034 SUPERFAMILY FYVE/PHD zinc finger 548 601 IPR011011 -
Mtr2g2820 1034 SMART PHD_3 560 601 IPR001965 -
Mtr2g2820 1034 SMART PHD_3 651 704 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2820 Mtr-Chr2 41677038 41684644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2820 227 734 PHD Transcription Factor Family AT2G36720 43.309 2.56e-141 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2820 - - mtr:MTR_2g084425 1949.87