Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2815 ATGATGTCAAGGACAACACCTCTAGGGTTTGAAATTGAAAATCAAGGCCTACAAATGTTTCCTATGGTCACGGAAGATTTTATGCCATTGCCAAATTCCATGGAAGGAATTTCAAGTTCAACTTCACCCTCCAATTCCCTCCTCTTCAATCTCTCTACTCTCAAAGACAAGCTTAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTCATCAACTTCCATGGCATTATCCACAATGAACTCCACAATACAAGAAATCATTGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACTACTTCTATTAAATGTACAAACCAAGAATTTCAAAAGCAACAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAGCATTGATCTTAGAGGTCAAAGCATATTTTCTAATAATGAGTCAGAACCATTGGATTGGTTTGGTGAAAGCTATAATAGTAACATTAATTATAGGCTCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATAGTTCAACGAAGAATAATTCTGATCGTGACGATACATGCTTAAAATTTGGGTCATCTTATAATTGGGTCGGTCCAGAATGTGACAATGAGATAGTTGAATTGGACGCGGCTGATTTATTAGCTAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAATAGAGATTATTTGATGAGTATGAAAAATAGGAAATATTCATGTCCTCAAGCAGGGTGTAGATGGAACCAAAAACATGCCAAGTTTCAACCATTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTGTGCAAGAGGTGTAATTTGAAGCAATTTTCTGTTCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAGTGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACACCACCCGGTTATCAATGGTTTGTCATATAGTAGTACTCACACAAGTTAG 1203 0.3699 MMSRTTPLGFEIENQGLQMFPMVTEDFMPLPNSMEGISSSTSPSNSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSTMNSTIQEIIVTSTSMMFTCQQIALSFPQGTTSIKCTNQEFQKQQSNIQSNFGNNDTSIDLRGQSIFSNNESEPLDWFGESYNSNINYRLKDDIDDQRVDHEISETNNSIRGSNEDSSTKNNSDRDDTCLKFGSSYNWVGPECDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKNRDYLMSMKNRKYSCPQAGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSSTHTS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2815 400 Gene3D Classic Zinc Finger 331 380 - -
Mtr2g2815 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Mtr2g2815 400 Gene3D Classic Zinc Finger 242 315 - -
Mtr2g2815 400 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Mtr2g2815 400 PANTHER OS08G0562300 PROTEIN 12 396 - -
Mtr2g2815 400 SUPERFAMILY beta-beta-alpha zinc fingers 242 268 IPR036236 -
Mtr2g2815 400 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 396 IPR044300 GO:0010044|GO:0010447
Mtr2g2815 400 MobiDBLite consensus disorder prediction 186 208 - -
Mtr2g2815 400 Pfam Zinc finger, C2H2 type 244 266 IPR013087 -
Mtr2g2815 400 SMART c2h2final6 333 355 IPR013087 -
Mtr2g2815 400 SMART c2h2final6 295 328 IPR013087 -
Mtr2g2815 400 SMART c2h2final6 244 266 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2815 Mtr-Chr2 41624275 41625748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2815 44 388 C2H2 Transcription Factor Family AT5G22890 46.648 2.27e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g2815 zf-C2H2 0.00016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2815 - - gmx:100802769 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2815 2 41624275 41625748 Mtr2g2815 2 41624275 41625748 ECH