Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2814 ATGTTGTCTAAAATGGACATGGAAGGAATAATAGGAAGTGAAGAACATGGTAATGATGCCGGGCATCTCATCAAAGGAAAGCGAACGAAACGGTTAAGGCAATTGTCTCCTGTCACCGTGGCAACTGCTACGATGACATCAAGCTGCTCAAGTGCCACTGGAGGTGGTGGATCGTTTTCATCCACCACCTTCGATGACACTGAGCATGAAGAGGAAGCAGACATGGCTAATTGTTTGATTCTTCTGGCTCAAGGAAGAACCGGAAGAGATGAGGAGAATCAAAATCTTCGTCCTCAGAACCACCACCTCCACAACAACAGCCAACAAGTGGATGGTTACAACAAAACAACAACTGAAAAGGAGACAAAAAATGGTTTTGATAGTTATGAATGCAAAACTTGTAACCGTTTTTTCCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGACAAACAATCCTCACCTCCGCGGCCGCGACAATTAATCACCGCCACTGGTGAATTTGAACAAGAAAATAAGCAAATTCATCCCAAGAATATTAACCCTCTTGTTCCTCCAGTTTCTCTTGAATTAAGGTGTGGTGTTAATATCAACTTCAAACCTAATAAGGTTCATGGGTGTTCAATATGTGGAGCTGAATTCACATCAGGTCAAGCATTGGGTGGTCACATGAGGAGACACAGAGCTTGTATTAATAACAACAACAATAACAACAAAAACAACAACGTTGGTGTTGTTACAGGTTTTGAAGATGTTCATGTTAGGTCTAGGAATGTTCTTGAATTAGACCTTAACCTTCCGGCACCGGAGGAAGATCTCCGCGATTCGACGTTTCAGTTTCCGGCGTTGGTGGGTTGCCATTATTAG 894 0.4251 MLSKMDMEGIIGSEEHGNDAGHLIKGKRTKRLRQLSPVTVATATMTSSCSSATGGGGSFSSTTFDDTEHEEEADMANCLILLAQGRTGRDEENQNLRPQNHHLHNNSQQVDGYNKTTTEKETKNGFDSYECKTCNRFFHSFQALGGHRASHKKPKMKEDKQSSPPRPRQLITATGEFEQENKQIHPKNINPLVPPVSLELRCGVNINFKPNKVHGCSICGAEFTSGQALGGHMRRHRACINNNNNNNKNNNVGVVTGFEDVHVRSRNVLELDLNLPAPEEDLRDSTFQFPALVGCHY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2814 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Mtr2g2814 297 Pfam C2H2-type zinc finger 129 154 - -
Mtr2g2814 297 Pfam C2H2-type zinc finger 213 238 - -
Mtr2g2814 297 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Mtr2g2814 297 SMART c2h2final6 214 236 IPR013087 -
Mtr2g2814 297 SMART c2h2final6 129 151 IPR013087 -
Mtr2g2814 297 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Mtr2g2814 297 MobiDBLite consensus disorder prediction 99 113 - -
Mtr2g2814 297 MobiDBLite consensus disorder prediction 145 168 - -
Mtr2g2814 297 MobiDBLite consensus disorder prediction 1 21 - -
Mtr2g2814 297 MobiDBLite consensus disorder prediction 91 113 - -
Mtr2g2814 297 Gene3D Classic Zinc Finger 126 236 - -
Mtr2g2814 297 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 297 - -
Mtr2g2814 297 SUPERFAMILY beta-beta-alpha zinc fingers 128 236 IPR036236 -
Mtr2g2814 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 236 IPR013087 -
Mtr2g2814 297 PANTHER ZINC FINGER PROTEIN ZAT5 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2814 Mtr-Chr2 41609954 41611152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2814 10 297 C2H2 Transcription Factor Family AT2G28200 40.705 3.43e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g2814 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2814 - - gmx:100788646 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2814 2 41609954 41611152 Mtr2g2814 2 41609954 41611152 ECH
Mtr2g2814 2 41609954 41611152 Mtr1g3335 1 44525566 44527297 ECH
Mtr2g2814 2 41609954 41611152 Mtr1g2136 1 31442516 31443891 ECH
Mtr2g2814 2 41609954 41611152 Mtr4g1656 4 29020799 29022014 ECH
Mtr1g2136 1 31442516 31443891 Mtr2g2814 2 41609954 41611152 ECH
Mtr2g2814 2 41609954 41611152 Mtr4g1656 4 29020799 29022014 PCT