Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2696 ATGGAGAGAGATATGCTACCTTGGTTTAAACCCCAAATCGAAGAAGAGTGGTACATGAACAATATACCACCTTGTACCGAAAATCTTATCCCAAATCTTCAAAACCACATTCAACAACAAAACATTGTCGGTTCTTCAGACCCAAACACTTTTGTTTTTGAGCACCATTTAGGTTCCTCATTTTCTTTGCCATCGCCCAAATCCAATTTCTCAGATCTACTAAATATTAATGAAAATATCAACATCACTGATACCACCACCACAAACAATCCATTTGGTAATGTCTTCAATTTAGAACCCCAAGGTGTTGTTCAACCTCCATTGTCAATTGCAAAATTAACCTCGAATTATGACTCTAATGAGAGTGTTGGTGTTGGGAAGATGGGGAACCATGGAAAAAATAAGGGCAATAATTATAATTCAAATAACAATGTTGGGGGTAGTAATAATAACATCATATATAATAATGATGATGAAAATTGTGTTGTTGAGGGGGTCAAAAAAGAGAAGAAAAAGAAAACTCCATCAAAGAGTCTCATCGCTGAGAAGAAGCGAAGGCAGAAACTCAGTGATAATATGCACAAGCTTCGTTCTGTTGTGCCAAAGATTACCAAGATGGATAAAATTTCAATACTTGGGGATGCTGTTGACTACTTGAAGGAGTTAAAAAAACAAATTAGTGATCTTCAAAGTGAGATAGAGTCAAGCTCTCCTAGATCATTTGTGCCACCGCCTGCAGGAACTCGCATTAAAACATCCACCATGTCAACCCTTCCAGTTCAAATGAAAGAAAAGTTATGTCCTAACAATGTGTCGGGTCTTAAAAACCAACCAACAAAGTTTTTGTCTAAACTTGTATTTGTTGCCTCATGA 873 0.3677 MERDMLPWFKPQIEEEWYMNNIPPCTENLIPNLQNHIQQQNIVGSSDPNTFVFEHHLGSSFSLPSPKSNFSDLLNINENINITDTTTTNNPFGNVFNLEPQGVVQPPLSIAKLTSNYDSNESVGVGKMGNHGKNKGNNYNSNNNVGGSNNNIIYNNDDENCVVEGVKKEKKKKTPSKSLIAEKKRRQKLSDNMHKLRSVVPKITKMDKISILGDAVDYLKELKKQISDLQSEIESSSPRSFVPPPAGTRIKTSTMSTLPVQMKEKLCPNNVSGLKNQPTKFLSKLVFVAS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2696 290 Coils Coil 212 232 - -
Mtr2g2696 290 MobiDBLite consensus disorder prediction 127 150 - -
Mtr2g2696 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Mtr2g2696 290 SMART finulus 179 228 IPR011598 GO:0046983
Mtr2g2696 290 Gene3D - 164 237 IPR036638 GO:0046983
Mtr2g2696 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 242 IPR036638 GO:0046983
Mtr2g2696 290 PANTHER TRANSCRIPTION FACTOR SCREAM2 113 278 - -
Mtr2g2696 290 Pfam Helix-loop-helix DNA-binding domain 180 222 IPR011598 GO:0046983
Mtr2g2696 290 MobiDBLite consensus disorder prediction 133 150 - -
Mtr2g2696 290 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 113 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2696 Mtr-Chr2 40058221 40062329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2696 175 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.649 1.02e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g2696 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2696 - - mtr:MTR_3g104100 350.903