Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2630 ATGTCGGGCGCAAAGAAAACTCGAGGTCGACAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGTACCCTTTGTGGTGCATATATTGCTCTAATCATATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTTATCCAAATGTTGAAACGGTCATAGATCGTTATTTGTCTCTGATCCCACCCCAAAATGATGGCATCATGGAATTCATGGAGGATTTCCGTAGAGCCAAGGTGCGTGAGCTCAATGGTATATTGACTCGTATGAACGATGCAATAGACATTGACAAGAACCGTGAGAATGAGTTGAACCAACAACGAAAGATGAATGGGGGTCAGTTTTGGTGGACTCGTCCCATTGATGAGATGAATATGGTCCAACTTGATTTGTTAAAGAAGGCTTTGGAGGATCTTCAGAAACTTGTTCGACAACATGCTGATAGGGTTGAAATGCAAGGTACTTCTACCCAAGCCCTTCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTATTGAGCATCAACCAAATCCTCAACAAGAATCAAATTTTTCAGCTGATTTTTTTCATACCCATATGTTGCAACCTCATTTGTTTGGTTTCAACAACATGGGAGGACAAGATGGACATGGTCCTCATGGGTTCGTTTGA 714 0.4174 MSGAKKTRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGYPNVETVIDRYLSLIPPQNDGIMEFMEDFRRAKVRELNGILTRMNDAIDIDKNRENELNQQRKMNGGQFWWTRPIDEMNMVQLDLLKKALEDLQKLVRQHADRVEMQGTSTQALPFFVGNGSSSNMPIEHQPNPQQESNFSADFFHTHMLQPHLFGFNNMGGQDGHGPHGFV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2630 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 Gene3D - 87 181 - -
Mtr2g2630 237 PANTHER MADS BOX PROTEIN 8 173 - -
Mtr2g2630 237 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Mtr2g2630 237 Coils Coil 148 168 - -
Mtr2g2630 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr2g2630 237 Gene3D - 20 85 IPR036879 GO:0003677|GO:0046983
Mtr2g2630 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr2g2630 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2630 Mtr-Chr2 39337788 39338501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2630 4 189 Type I MADS-box Gene Family AT5G60440 47.619 4.05e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g2630 SRF-TF 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2630 - - mtr:MTR_1g105905 275.018