Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2608 ATGATTGTATTCGCGTATCCGTATCTATCATACCGTACTACATATCCGAACTTCATAACATTTTCTTTACTTTTTGTTTTCTATAAACTCTTCATGTTACTCTCATTGGAAGCAAGTAGTACAATGGAAGGGAAGCAAACATCAGTTGAGAAGGTTTGGAAAGACATCATATTTGAAGAAATAGAAGTTGAAGAAGAGGAGGAAGGTGGTGTTGAAGATGATGAGAAGAAGAAAGGTGTTTGTGTGAGTGGGAGAAAAGAGCCAAGTAGAGGTGGAAGATTTTCTTCACCTATTTGTCAAGTAGAAAGTTGTGGAGCTGATTTAACTTTTTCAAAGAGATATCATCGTCGCCATAAGGTTTGTGAGGTTCATTCCAAAGCATCTGTTGTGGTGGTTGCAGGGATGAGGCAAAGGTTTTGCCAACAATGTAGCAGGTTCCATGAGCTTGCAGAGTTTGATGAATCAAAACGAAGCTGCCGAAGACGCTTAGCGCGACACAATGAACGGCGTCGTAAAAGCACTGCTGGAACTTGCACTGAAGGAAGCAGTACTGGCCAAAAAAACAATGATGGTGATTGGAGACAAATTCATATGAACATAACAAGTAGTTCTGGTCATGATTTTCTGAATTTCAGATGA 639 0.3975 MIVFAYPYLSYRTTYPNFITFSLLFVFYKLFMLLSLEASSTMEGKQTSVEKVWKDIIFEEIEVEEEEEGGVEDDEKKKGVCVSGRKEPSRGGRFSSPICQVESCGADLTFSKRYHRRHKVCEVHSKASVVVVAGMRQRFCQQCSRFHELAEFDESKRSCRRRLARHNERRRKSTAGTCTEGSSTGQKNNDGDWRQIHMNITSSSGHDFLNFR* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2608 212 MobiDBLite consensus disorder prediction 176 193 - -
Mtr2g2608 212 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 184 IPR044817 GO:0003677
Mtr2g2608 212 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Mtr2g2608 212 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Mtr2g2608 212 SUPERFAMILY SBT domain 97 176 IPR036893 GO:0003677|GO:0005634
Mtr2g2608 212 MobiDBLite consensus disorder prediction 164 193 - -
Mtr2g2608 212 Pfam SBP domain 99 172 IPR004333 GO:0003677
Mtr2g2608 212 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2608 Mtr-Chr2 39079252 39082199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2608 42 182 SBP-box Gene Family AT3G15270 51.701 4.01e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr2g2608 SBP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2608 - - mtr:MTR_2g078770 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2608 2 39079252 39082199 Mtr2g0394 2 3983370 3986318 ECH
Mtr2g2608 2 39079252 39082199 Mtr4g2941 4 43117075 43121647 ECH
Mtr2g2608 2 39079252 39082199 Mtr2g2608 2 39079252 39082199 ECH