Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2603 ATGGAAAGCTTCTTCCACCACCATCATAACATGAACAACAACAGTAATAACAACAGTGATGCACATTTACCACCTGGTTTTCGTTTCCACCCAACTGATGAAGAACTCATCACATTCTACCTTCTCAAAAAAGTTCTTGACACCACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAGTGTGAACCATGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTCTACGTGACAGAAAGTATCCAACTGGTTTGCGTACAAATAGAGCAACAGAAGCTGGTTATTGGAAAGCAACTGGGAAAGATAGAGAGATTTATAGCTCAAAAACTTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTATAGAGGAAGAGCTCCTAAAGGTGAAAAAAGTAACTGGGTTATGCATGAATATCGCCTTGAAGGAAAATTTGCTTATCACTTCCTCTCTAGAAACTCTAAGGATGAATGGGTCATTTCACGTGTGTTTCAAAAGAGCAACACTGGAAATGGAAGCACCACCGTGACAGTTGCCACCACAAGTGGTGCAAAAAAGACCAAAATAGCCTCAAACTCAGCCAGTAACAACAGCATGAGTCTTTGTCCTGAACCAAGTTCACCTTCTTCAGTTTACCTTCCACCTCTTCTTGATTCATCTCCCTACACCGCCGCTAGCACCGCCTCATTCAACGGTGGTCAAATGTGTAACTACAACAGCTCCAACAACAACACTGATCTAAAGGAGCACGTGTCCTGTTTCTCCACAACATCTACAACATCAAATGTTGTCTCTGTTCACAACAACTTCAACAGCAACAGCAATGGAAGTTTTGATCTTGTTTCACCTTCTATGAATGCAACAATGGATCCTTTTGCAAGGTTTCAGAGGAATGTCGGTGTTTCTGCTTTTCCTAGCTTGAGATCACTACAAGATAATCTTCAGCTTCCTTTCTTTTTCTCCTCGGCCGCCGCGGCGCAGCCTTTTCCCGGTGGTGGTGATATTCTTGGTGGCTGGGGGATGCCATCGGAGGAGCAAAGGGTGGTGGTTGACAGTGGTGGTGGTCTCAACATGGGAGGATTAGGTTCTTCTGAGCTTGATTGCATGTGGAACTATTAA 1146 0.4346 MESFFHHHHNMNNNSNNNSDAHLPPGFRFHPTDEELITFYLLKKVLDTTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGSTTVTVATTSGAKKTKIASNSASNNSMSLCPEPSSPSSVYLPPLLDSSPYTAASTASFNGGQMCNYNSSNNNTDLKEHVSCFSTTSTTSNVVSVHNNFNSNSNGSFDLVSPSMNATMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSSAAAAQPFPGGGDILGGWGMPSEEQRVVVDSGGGLNMGGLGSSELDCMWNY* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2603 381 ProSiteProfiles NAC domain profile. 23 175 IPR003441 GO:0003677|GO:0006355
Mtr2g2603 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 378 - -
Mtr2g2603 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 16 378 - -
Mtr2g2603 381 Pfam No apical meristem (NAM) protein 24 150 IPR003441 GO:0003677|GO:0006355
Mtr2g2603 381 Gene3D NAC domain 32 179 IPR036093 GO:0003677|GO:0006355
Mtr2g2603 381 SUPERFAMILY NAC domain 15 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2603 Mtr-Chr2 39004720 39007061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2603 4 381 NAC Transcription Factor Family AT5G53950 52.463 1.39e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr2g2603 NAM 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2603 - - cam:101501114 553.903