Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2601 ATGGCTCCAAGAGATAACAGAATCACCAACACCACCACCGGGCCTGGGCCAAACCCATCAGCCCAGGCTCAAGCCCAGAAAGAGATTCGTTACAGAGGTGTAAGAAAACGTCCATGGGGTCGTTACGCCGCTGAGATCCGTGACCCAGGTAAAAAAACACGTGTCTGGCTTGGAACATTCGACACCGCTGAAGAAGCAGCGCGTGCTTACGACAAAGCGGCACGTGAGTTTCGCGGCTCAAAAGCGAAGACAAATTTTCCAACGCCGTTGGAGATTATCAACAACGGTAGCCCTAGTCAAAGCAGCACTCTTGAATCACCGTCGCCACCTCCGCTTGATTTAACTCTCACACCATTCTCCTCCTCCCACGGTGGTGTTACCTTGGCCTATCCGGTGGCGCGTCCTGTTTTGTTTTTTGACGCATTCGCACGTGCTGAAACAGCCCTAACCGTTGGCCGTCGTGAGATGTGTGGATTTGAACGTCCCATGGCTGATTTTCGACGCGCCGCCGTGCAGAGTGACTCTGGTTCTTCTTCCTCCGTTGTTGATTATGAAGGTGTGCCACGTCAGAGACTCTTGGATCTTGATCTTAATGTTCCTCCACCACCTGAAGTTGCTTGA 621 0.5233 MAPRDNRITNTTTGPGPNPSAQAQAQKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGSKAKTNFPTPLEIINNGSPSQSSTLESPSPPPLDLTLTPFSSSHGGVTLAYPVARPVLFFDAFARAETALTVGRREMCGFERPMADFRRAAVQSDSGSSSSVVDYEGVPRQRLLDLDLNVPPPPEVA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2601 206 MobiDBLite consensus disorder prediction 1 25 - -
Mtr2g2601 206 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Mtr2g2601 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 189 - -
Mtr2g2601 206 MobiDBLite consensus disorder prediction 87 115 - -
Mtr2g2601 206 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Mtr2g2601 206 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Mtr2g2601 206 PANTHER ERF FAMILY PROTEIN 1 189 - -
Mtr2g2601 206 MobiDBLite consensus disorder prediction 85 115 - -
Mtr2g2601 206 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mtr2g2601 206 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Mtr2g2601 206 MobiDBLite consensus disorder prediction 1 27 - -
Mtr2g2601 206 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mtr2g2601 206 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mtr2g2601 206 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2601 Mtr-Chr2 38974407 38975503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2601 14 140 AP2-EREBP Transcription Factor Family AT3G15210 57.237 1.48e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr2g2601 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2601 K09286 - gmx:100500601 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2478 4 38368290 38369293 Mtr2g2601 2 38974407 38975503 ECH
Mtr2g2601 2 38974407 38975503 Mtr2g0404 2 4086213 4087258 ECH
Mtr2g2601 2 38974407 38975503 Mtr2g2601 2 38974407 38975503 ECH