Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2582 ATGGATCAGATGACAGATTCGGATAGGGATCAACAACGGCAAGGCTATTTTCATTCCGAACCGTGTGTTGTTTTGAGAGGTCCCAGCGTCGGACATCCTAATATCCGCTCAGTGGTGACTGCTTCAGGGAACACATCTAATGTTGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTGCACAATTCAACGGCATTCCACCTCAACATAATCTTGAGATGGGCGTTGCAACTGCAGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACCGGTGTTTTCCCTTTGCCTCATAGAGCCTCCGATCAGTTGCCAGGTTCAAGCACATTTGCAATTTCCGGAGTTTCCTTAGATAATTTCGGAAGAAGCAATGGTTTCATGGATGACGCTAGAGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCACCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCACCAAATGCAAGGCACGCTGATGGGGTTGCTATGATGGATACTGCGCCATTGCCATTCCATGTCCCTTCACTTGTTGGAGTAGGACCACATGGTGGTGCGTGGAGTAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCACGGAAATTATTTGGGACAGCACTATCCACCAGCGGCTCCTCCGTGGTTGGACCAGCAAGTGAATAGCAATAGCAATGATGGCCATACTACAGCCTGGAATCCGTCTGTGCCAATACCTTATATTCAAGCACCAAATATTAATGGAAGTTCATTAGAGAGTGCAAATATGGGTTTGCAGAGGTATCACGACACAGCTGGTAACCGAAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAATCAACAGCACCCTAATTATCATCATCCAACTCTCCCTATGCAAGGAATAAGAGGTCACAATATCAGCTTTCATCCTCCAGTAACTGCAGCTTCATTTAGAGTTCCACCAAATCCTCCACGCGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGTAGGTCCTAGGCATATTGTCCCTGCACCATCAACAGGCTTCCGGATTTTCCGACCTCATAGGCTCATGCCAGAGATACCTCTCGGACATCGAAGTCTACCTCCTGTGGGCTTCTTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATCTGATTGACCATCACCGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGAGGATAGGCAGTGTAAACACTGGTTTATCTGAGGAGACAATTGAAACTCAACTGAAGTCTAAAGTTTATTCAACGAAAGCCACTGATATTAATCTTGAGGAGGCAGCTTCTGACGATCAGGAATCTGATTCTTGCATAATATGTCAGGAGGAATTTAAGAACAAAGAGAAGATTGGGATACTTCGGTGTGAGCATGAATATCACGCCGAATGCTTAACAAAATGGTTGCTTGTCAAGAATGTCTGTCCGATATGCAAATCAGAAGCATTGGCTCCTGGAAGCAAAGATGCATAG 1572 0.4485 MDQMTDSDRDQQRQGYFHSEPCVVLRGPSVGHPNIRSVVTASGNTSNVDSHYLPDAYDNARVYGIAQFNGIPPQHNLEMGVATAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSNGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFHVPSLVGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHYPPAAPPWLDQQVNSNSNDGHTTAWNPSVPIPYIQAPNINGSSLESANMGLQRYHDTAGNRNVLRFPPPPPPVNQQHPNYHHPTLPMQGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPQTGFEVGPRHIVPAPSTGFRIFRPHRLMPEIPLGHRSLPPVGFFQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIETQLKSKVYSTKATDINLEEAASDDQESDSCIICQEEFKNKEKIGILRCEHEYHAECLTKWLLVKNVCPICKSEALAPGSKDA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2582 523 SMART ring_2 471 511 IPR001841 -
Mtr2g2582 523 Pfam Ring finger domain 469 512 IPR001841 -
Mtr2g2582 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 519 IPR045191 GO:0061630
Mtr2g2582 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Mtr2g2582 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 519 - -
Mtr2g2582 523 SUPERFAMILY RING/U-box 465 515 - -
Mtr2g2582 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2582 Mtr-Chr2 38784537 38788572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2582 388 516 C3H Transcription Factor Family AT2G15530 45.385 1.40e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2582 K19041 - gmx:100800642 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2582 2 38784537 38788572 Mtr2g2582 2 38784537 38788572 ECH