Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2578 ATGGCACAGTTACCTCCTAAAATACCAAGTACCATACCCCAAAATTGGCCATATTTTCCTCACCAAAGGGTATCATCATCATCCACAATGTCAAACATCACCTCCACCACCACGACCACGGCCACGACCCAGAATAATACTTCTGACCATCAACAATCACCACCATCACAACAATTACCATCATGGATAGACGAATTCCTCGATTTTTCCTCGGTAAGGCGAGGGGCTCACAGGCGGTCTGCTAGCGACTCTATTGCCTTCCTCGAGACATCATTTCTCGAGGAAGACTGCAGGAGTGGTGGTGGCGGTGGTGGAGGATTTGATAGACTGGATGATGACCAATTAATTTCCATGTTCTCTGACAATGTTGCCGGCGTATCTTTCCCGCCTTTGCCGTTGTCATCAACATCCAACCCATCGTCACCATCCTCCGACCAAAATAGCAATAACAATGAAGAGAAACCAATGGCAATGGTGTTGGATGAACAACCTCAAGAGCATTATCTTCATCATGAGGTGAAGCCTAAGGATGAAGCCGTTGATGACGACGGTTCATGTAAAAATGAGGCGGCGGCGGCGCCATCTTCCTCCGGAAACATCACCTGCACTGAAACCGTTGTGGATCCCAAGAGGGTCAAAAGAATTTTGGCTAATAGGCAATCAGCTCAAAGGTCAAGGGTGAGAAAACTACAATATATTTCTGAGCTTGAAAGGAGCGTAACATCTTTGCAGACGGAGGTTTCAGCACTGTCACCACGAGTTGCATTCTTGGACCATCAACGTATGATTCTTACTGTCGACAACAGTGCCATAAAGCAACGGATTGCAGCATTGGCCCAGGACAAGCTTTTCAAAGATGCTCATCAAGAAGCATTAAAGAAGGAAATAGAAAGGTTGAGGCAAATCTATCACCAACAAAACATACAAAAGATGGGAAATTCAGTCAATAATAACATTAACAATGGCCATTCTCTTCAATCTCCAACACCAACATCACAGCCACAACAACAATCTTTCCATCAGCACAAGGAGCAAATCCTCAGTTAA 1047 0.4508 MAQLPPKIPSTIPQNWPYFPHQRVSSSSTMSNITSTTTTTATTQNNTSDHQQSPPSQQLPSWIDEFLDFSSVRRGAHRRSASDSIAFLETSFLEEDCRSGGGGGGGFDRLDDDQLISMFSDNVAGVSFPPLPLSSTSNPSSPSSDQNSNNNEEKPMAMVLDEQPQEHYLHHEVKPKDEAVDDDGSCKNEAAAAPSSSGNITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRMILTVDNSAIKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIQKMGNSVNNNINNGHSLQSPTPTSQPQQQSFHQHKEQILS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2578 348 PANTHER BASIC LEUCINE ZIPPER 34 1 330 - -
Mtr2g2578 348 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 213 228 IPR004827 GO:0003700|GO:0006355
Mtr2g2578 348 PANTHER BASIC LEUCINE ZIPPER 2 1 330 - -
Mtr2g2578 348 SUPERFAMILY Leucine zipper domain 210 264 IPR046347 GO:0003700|GO:0006355
Mtr2g2578 348 SMART brlzneu 206 270 IPR004827 GO:0003700|GO:0006355
Mtr2g2578 348 MobiDBLite consensus disorder prediction 312 348 - -
Mtr2g2578 348 Pfam bZIP transcription factor 210 255 IPR004827 GO:0003700|GO:0006355
Mtr2g2578 348 CDD bZIP_plant_RF2 211 262 IPR044759 GO:0003700|GO:0006355
Mtr2g2578 348 MobiDBLite consensus disorder prediction 129 152 - -
Mtr2g2578 348 Coils Coil 289 309 - -
Mtr2g2578 348 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 208 260 IPR004827 GO:0003700|GO:0006355
Mtr2g2578 348 MobiDBLite consensus disorder prediction 1 59 - -
Mtr2g2578 348 Gene3D - 209 280 - -
Mtr2g2578 348 MobiDBLite consensus disorder prediction 177 198 - -
Mtr2g2578 348 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2578 Mtr-Chr2 38729829 38733765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2578 1 288 bZIP Transcription Factor Family AT3G58120 49.201 7.54e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr2g2578 bZIP_1 1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2578 - - lja:Lj0g3v0133049.1 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2578 2 38729829 38733765 Mtr2g2578 2 38729829 38733765 ECH