Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2559 ATGGAACATTTATGTGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGATGACACTTTTCAGTCTAATCAGAGGCGTGTTATTTCTGGAGCCATCAACCTTGAACATGAATCCACGAAAAACACATTTAAGTCATTTGGCTCTAGTAATGAAAACTCGGTCATATGGCGTCCCTCATCTTCAAGATTTATCCATCCCGAGGAGGACATTAATGCAATTCAGCATTCCAATGAGACTGCTCTGGGATGTTTGCCAGAGAGTTTAACTTGTGAAGATCAGAATGATGAGAATGTAAATGTCAAACGTATGAAATTTTCTCTGCACGAACTTCCTTGTAGTAGATCTAATTCAGATGTTTTGGGTTCATCTGGAATTCCAAAAGTAGTAATTTCCAACCTGACTTGTGCTGCTACAGACTGTGATAGTGACTCGATTGCATTTCGTACAGTTGAATCTTCTAAACACGGTGTGATATCTAGTTGCTATCTATTGAAGCATAACTTGGTACAGAAAATTCATGCTTCTAATGACGATGCAGATGTTACAAATTGTAAATCTAAAACAGAAGATGGGAACATCCCAAAGGAGGTGTCTGTAAGTAAGTCAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAGCAGGCTAGTAGTAACGAGTCCATCAATCACTGTTGTGAAGAAGTCCGAGTCTCCCTTAAGAACTGAGGAAATGCCTGAAGGGTTTCAATCTTCTAATATGGTTATCTCAAATTCATTGTCCCAGCTGGACCAAGAGGATCCCCGTCCCTTACTGCAGTTTCATATCGTGCAGTTGCTTACGATGTCAGGATGGTCTATTGGGAAGCATCAACGGCCTTCTAGACGGTGGATGGAGTCATTCTACAAGACACCAAAGGGAAAAATTATGCGGGAATTTACAAAAGTTTGGAGATTATGTGGCCAACTTTTGTCTGTTGAAAAGTGCAATGTAACATATGGAGGCCGTAAAGAATGGACCAATATTAGCGATTTTTGGTCCGATCTATCGAGTGCACTGAAAAATGTTGAAAAATTAAAAAACCAGCCAGAGACCGCTGCTATGTTGGCTTATCAATGGTGGATTATGGATCCTTTTGTAGTAGTTATACATTTTGATAGAAAGGTCGGTGCTCTGAAAAGGGGAGAAGAGGTTATAAAAGCAAGCTGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATTCTTCAAAAAAAAAGGGTAAAATGGCATATGCTCCAGTTGATTCAGCCTTGGAGAATACGTCTCACACTCTTTCTGAACAAAAGCACGACCAAGCCATTTTCTGCGACTCTTCAACAGCCACCAGAACCACAGAAATATCTGCTTTTATGATAAACAGTCATGCTTGTAAACAGACATCCGACGGTAACCAAGAAGATATGTATGTCGAAGAACATAAACCAAACATCATAGAAAACCGATTAATGGAAATGTCAGTGAGCAAAAGTAGTATGGATCTAGCCTCTTTACCTGCTTGTGCATTGGGTAGCACTGTTACCCATTCAAGTGCTTCCTCTTTTGATGTTCTTACAAGCTCTGGAAATTTGGACTTGGAATCTAAAGTAAATGCTGTTCATCAAGCTAAACTTAGAAATTCTAAAAGCTCTGATAAGCACGCATCAGAAAATCGGTCCGAATGCAGTGAGGAAGAGGGGAGGAAAATCTCAATGGCTTCTGTTTTTGGGAAAGATAGTACATGGTCTTCCTCTAATGGTATTCTTAAAAAGAAAATGCGGAAGAAGTGCAAAAGGATATCTCAGATCAAACCGAGTATGTTACACCACAGTGACATACTGGGATCAACTGTTACTGATCAGGTGCAGTCACTGAATGGTGATGTATGTGGCACTCAGACTGTGTTGGAAGAAGTTCAAGATTATGTAGTTGACAGTGTGGGAAAAAAAAAGAACAAGAAGAAGTTATCAGGCAGTGCAAACCAGCGACATATTAAGAAAACAAACTACTCTACTACTAAAACAAATAAGTCCAATAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATACTCAAGAATAAGGACTTCAACCCAAAGATAATGCGAGGTAAATCTAGAGCTAAATCCGGCAAATCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGCCGTTGCAGGTTGCTTCCAAGGAATCCTTGTAATGGAGGGAAGCACAATATGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGAGGTCATATGTTTAAATGACATCATTCAATACCGAAACTCTAAAGATAATTCTGTCACTAAGGATGGCAAGATCACCAAAGACGGTATTGTTTGTAAGTGTTGCGGTAAGGTGCTTACATTATCAGAGTTCAAGATTCATGCTGGGTTTACACTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAAAATCAAGCTGGGAACATTGTTGATAATGACAGAAATGATGATTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGCTGTGATAACTGTCCATCTACTTTTCACCTGGCTTGTTTGTCCGCTCAGGAGATCCCCGATGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGTTTCAGATGCACATGATTCATCGCAATGTTCACAATGCGAACATAAATATCACAAGAAATGCCTCGGAGAAAGAGATAAACAAGAAGGAGCTGTTTCAGACACTTGGTTTTGTAGTCAAAGTTGTCGGGAGGTATACTGTACTCTTCAATCTCAGGTTGGGCTAGTTAATCAAGTTGCTGATGGCTTCGACTGGACGCTTCTTAGATGCATACATGATGACCAGAAGGTTCATTCTGCTCAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACAATCATGGAGGAGTGTTTCGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATTCAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACAGTGGTGTTGGAAAAACAGGATGTGTTAATATCTGTAGCATCCATCAGAGTGCACGGGACTACCGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGCCGACGCCTCGTGAGCTCAATCGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCGGATTTGGTGGAGACTTGGACCAAGGGCTTTGGATTCGTGCCTGTAGGCGACACTGAAAAACGAAGGTTAAAGAAAAACAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAGATGAAGGACTGTGTGATCAATCAACTTTAGCAACAGATGAATCGTTCAAAGCAGGTATCTGTTCTGAAGGAATGGACATATCCGAATCATTGCCGCTAGATGTTGGGAACGTAGCTACCAACGAAGTTGGTGCTAAGTCAGAGTGTGAACCTGTGGACTGCAAAAATCAACCAGACAATAGGGCCGACAGTGAAATCAGCAGAGATGATAATATTCTAGCCGTTGAAATTGCATTAGGAGACAAAGAATCAACAGAGACAAGTAGGTCTTTCGGTGAAGAGAAAATCACCCCTTTTGAAGGAAACAATGTGGAGGTACCAAGAACAAGTGCCAATAAAGATGGCACTGAATCTGGTGGAAGAGTTTTTGAGGACAAGAATATCAATATAGGTGAAGTAAAGGAAAATGATATGCATGAACATGTTTCAAATGTGTCGTGCAAGACATTTTCAGGCAACAATTTTGACACAGTATCTAATTTTGAATGTTCAGCGATGTATGATGAAACCGTTATTTTTGGTTCACTAGCAAACTCTGCAAATTAG 4059 0.4063 MEHLCDDNFEGSNEERQIFTEVFFGDDTFQSNQRRVISGAINLEHESTKNTFKSFGSSNENSVIWRPSSSRFIHPEEDINAIQHSNETALGCLPESLTCEDQNDENVNVKRMKFSLHELPCSRSNSDVLGSSGIPKVVISNLTCAATDCDSDSIAFRTVESSKHGVISSCYLLKHNLVQKIHASNDDADVTNCKSKTEDGNIPKEVSVSKSVASPVSQESSASRLVVTSPSITVVKKSESPLRTEEMPEGFQSSNMVISNSLSQLDQEDPRPLLQFHIVQLLTMSGWSIGKHQRPSRRWMESFYKTPKGKIMREFTKVWRLCGQLLSVEKCNVTYGGRKEWTNISDFWSDLSSALKNVEKLKNQPETAAMLAYQWWIMDPFVVVIHFDRKVGALKRGEEVIKASCSLVSSKGKMAYSSKKKGKMAYAPVDSALENTSHTLSEQKHDQAIFCDSSTATRTTEISAFMINSHACKQTSDGNQEDMYVEEHKPNIIENRLMEMSVSKSSMDLASLPACALGSTVTHSSASSFDVLTSSGNLDLESKVNAVHQAKLRNSKSSDKHASENRSECSEEEGRKISMASVFGKDSTWSSSNGILKKKMRKKCKRISQIKPSMLHHSDILGSTVTDQVQSLNGDVCGTQTVLEEVQDYVVDSVGKKKNKKKLSGSANQRHIKKTNYSTTKTNKSNRCHIEDDDLLVSAILKNKDFNPKIMRGKSRAKSGKSRGLRKLKSHKGRCRLLPRNPCNGGKHNMDGKKYYLGERTLLSWLIENEVICLNDIIQYRNSKDNSVTKDGKITKDGIVCKCCGKVLTLSEFKIHAGFTLSRPCLNLFMKSGEPFTLCLLQAWSAEYKARKSQNQAGNIVDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSAQEIPDGNWYCINCTCRICGNLVIDKEVSDAHDSSQCSQCEHKYHKKCLGERDKQEGAVSDTWFCSQSCREVYCTLQSQVGLVNQVADGFDWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLFNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRRLVSSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDTEKRRLKKNNLMVFPGTVLLEKSLYGKKKDEGLCDQSTLATDESFKAGICSEGMDISESLPLDVGNVATNEVGAKSECEPVDCKNQPDNRADSEISRDDNILAVEIALGDKESTETSRSFGEEKITPFEGNNVEVPRTSANKDGTESGGRVFEDKNINIGEVKENDMHEHVSNVSCKTFSGNNFDTVSNFECSAMYDETVIFGSLANSAN* 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2559 1352 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1021 1143 IPR016181 -
Mtr2g2559 1352 MobiDBLite consensus disorder prediction 553 575 - -
Mtr2g2559 1352 ProSitePatterns Zinc finger PHD-type signature. 870 909 IPR019786 -
Mtr2g2559 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 860 912 IPR013083 -
Mtr2g2559 1352 ProSiteProfiles Zinc finger PHD-type profile. 867 912 IPR019787 -
Mtr2g2559 1352 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1017 1167 IPR000182 GO:0016407
Mtr2g2559 1352 Gene3D - 1014 1151 - -
Mtr2g2559 1352 PANTHER PHD FINGER PROTEIN 12 2 1277 IPR042163 GO:0003714|GO:0045892
Mtr2g2559 1352 PANTHER PHD FINGER PROTEIN 12 1280 1349 IPR042163 GO:0003714|GO:0045892
Mtr2g2559 1352 Pfam Tify domain binding domain 792 842 IPR032308 -
Mtr2g2559 1352 SMART PHD_3 911 965 IPR001965 -
Mtr2g2559 1352 SMART PHD_3 869 910 IPR001965 -
Mtr2g2559 1352 SUPERFAMILY FYVE/PHD zinc finger 858 911 IPR011011 -
Mtr2g2559 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 913 968 IPR013083 -
Mtr2g2559 1352 MobiDBLite consensus disorder prediction 551 575 - -
Mtr2g2559 1352 PANTHER INCREASED DNA METHYLATION 1 1280 1349 - -
Mtr2g2559 1352 PANTHER INCREASED DNA METHYLATION 1 2 1277 - -
Mtr2g2559 1352 Pfam PHD-finger 870 911 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2559 Mtr-Chr2 38459756 38469658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2559 1 400 PHD Transcription Factor Family AT3G14980 32.921 2.46e-44 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr2g2559 TDBD 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2559 - - mtr:MTR_2g078040 2680.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2559 2 38459756 38469658 Mtr2g2559 2 38459756 38469658 ECH