LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g2536	ATGTTCGATACCAAGCCACTTGTGTCTGCAATGGCCTCAATTGTGTTCATGCGAACCATCACGAATGAGCTCATTCCTCATGAGCTCCTACAATTTTTTCAAGCTGGAATTCACCATCTTTTTCGCCAATCCTCCGCACAATTCACCATACTCATTGAAGAATTTCAAGGGATGGCAAGAAACCAAGTTTTTGAGGCTGCACAAGCCTATCTAGGAACTAAAGCAACTGTCTCAGCAGACAGAGTTAAGGTAAGCAAATCTGAGGATCATAAAGAGCTTGCATTCAATATTGATAGAAATGAAGAAGTGAGTGATGTTTTTGAAGGTGTTAGTGTAAAGTGGAAACTAATATGTATACAAGTCGACTCATCAAGAATTAGACATTACGATAATGACTCCTCACCCGTGTCAGAAATAAGATCCTATGAGCTAACTTTTCACAAGAAGCACAAGAACAAGATCTTCGATTCATATTTGCCTTATGTGATGGAGATAGCTAAACAGATTAAACAAGGAGACATGGCAATCAAGATTTACTCAAATGAATATAGCTGGTCTGGTGATGTCAAGTTTAATCATCCAATGAGTTTCGACACTCTTGCAATTGATGAAGAGCTTCAAAGGGATATTAAGAATGATTTGGACAAATTTGTGAGGTCTAGAGAGTTTTATAGAAGAACAGGGAAAGCTTGGAAACGCGGTTACTTGTTGTATGGCCCTCCTGGTACTGGAAAGTCTAGTTTGATTGCAGCCATGGCTAACTATCTCAACTATGATATCTATGATTTAGATCTCACTAATGTACAAGATAATAAGCGCTTGAAGCAACTTATTCTTGACATGTCCAATCGTTCTATACTTGTGATAGAGGATATTGATTGCACCGTAAAATTGCAAAACCGAGAAGAAGATGAAGAAATTGTTGATAATGGATACAATAAGATGACACTTTCGGGACTATTGAATGCGACAGATGGTCTCTGGTCGTGCTGTGGAGAAGAACACATAATTGTTTTCACAACAAATCACAAAGACAGGCTTGATCCTGCTCTATTAAGGCCTGGTAGAATGGACAAGCAAATTCACTTGTCATATTGCAACTTTTCTGCTTTTAAGAAATTGGTTACTAACTACCTTTGCATTACTGAACATGAACTCTTTGAAAAGATTGAAGTGCTTCTAGGAGAAGTTCAAGTTACTCCTGCTGAAATTGGAGAAGAGCTCACAAAGGATTGTGATGCTACAGAATGCCTACAAGACCTTATCAAATTCCTCCAAGCCAAGAAAATGATCAAGGAAGAGATTAGGAATGAACGGTCCACTCAAATTAAACAAGGAATGGTGGCACTTAAGATTCACTCAAATGACTATGATTGTTGGTGTTGTAAACCTACTAAGTTCAACCATCCAATGACTTTCAACACTCTTGCAATTGATGAAGAGCTTCAAAGGGAAATTAAGAATGATTTGGACAAATTTGTGAGGGATAATGAATTTTATAGAAGAACCGGGAAAGCTTGGAAACGCGGTTACTTGTTGTATGGCCCTCCTGGTACTGGAAAGTCTAGCTTGATTGCAGCCATGGCTAACTATCTCAACTATGATATCTATGACTTGGATCTCACAGATGTAGAGGATAATAAGAGCTTGAAGCAACTAATTCTCAGCATGTCCAACCGTGCGATACTTGTGATAGAGGATATTGATTGCACTATAAATTTGCAGAACCGAGAAGAAGAGAAAGAAGCTGTTGATAATGGAGACAATGATAAGGTGACACTTTCAGGACTATTGAATGCAGTAGATGGTCTTTGGTCATGCTGTGGAGAAGAACACATAATTGTTTTCACAACAAATCACAAAGAAAGGCTTGATCCTGCTCTATTAAGGCCTGGTAGAATAGACAAGCAGATTCACTTGTCATATTGCAACTTTTCTGCTTTTAAGAAATTGATTATTAACTACCTTTGCATTACTGAACATGAACTCTTTGATAAGATTGAAGTGCTTCTAGGAGAAGTTCAAGTTACTCCAGCTGAAATTGCAGAAGAGTTAACAAAGGATTGTGATGCTACAGAATGCCTACAAGACCTTATCAAATTCCTCCAAGCCAAGAAAATGATCAAGGAAGAGATAAAGATTGAAGAAAATAACAAAGAAGAAGGTGAACTAGGTAGAGAAAATATATAG	2190	0.3785	MFDTKPLVSAMASIVFMRTITNELIPHELLQFFQAGIHHLFRQSSAQFTILIEEFQGMARNQVFEAAQAYLGTKATVSADRVKVSKSEDHKELAFNIDRNEEVSDVFEGVSVKWKLICIQVDSSRIRHYDNDSSPVSEIRSYELTFHKKHKNKIFDSYLPYVMEIAKQIKQGDMAIKIYSNEYSWSGDVKFNHPMSFDTLAIDEELQRDIKNDLDKFVRSREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTNVQDNKRLKQLILDMSNRSILVIEDIDCTVKLQNREEDEEIVDNGYNKMTLSGLLNATDGLWSCCGEEHIIVFTTNHKDRLDPALLRPGRMDKQIHLSYCNFSAFKKLVTNYLCITEHELFEKIEVLLGEVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKMIKEEIRNERSTQIKQGMVALKIHSNDYDCWCCKPTKFNHPMTFNTLAIDEELQREIKNDLDKFVRDNEFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVEDNKSLKQLILSMSNRAILVIEDIDCTINLQNREEEKEAVDNGDNDKVTLSGLLNAVDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRIDKQIHLSYCNFSAFKKLIINYLCITEHELFDKIEVLLGEVQVTPAEIAEELTKDCDATECLQDLIKFLQAKKMIKEEIKIEENNKEEGELGRENI*	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g2536	729	Gene3D	-	639	708	-	-
	Mtr2g2536	729	Gene3D	-	362	432	-	-
	Mtr2g2536	729	PANTHER	BCS1 AAA-TYPE ATPASE	438	718	-	-
	Mtr2g2536	729	PANTHER	BCS1 AAA-TYPE ATPASE	4	434	-	-
	Mtr2g2536	729	CDD	AAA	508	642	-	-
	Mtr2g2536	729	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	464	687	IPR027417	-
	Mtr2g2536	729	Pfam	Domain associated at C-terminal with AAA	25	117	IPR025753	-
	Mtr2g2536	729	Gene3D	-	464	638	IPR027417	-
	Mtr2g2536	729	Gene3D	-	188	361	IPR027417	-
	Mtr2g2536	729	SMART	AAA_5	507	644	IPR003593	-
	Mtr2g2536	729	SMART	AAA_5	231	367	IPR003593	-
	Mtr2g2536	729	CDD	AAA	232	365	-	-
	Mtr2g2536	729	PANTHER	NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED	4	434	-	-
	Mtr2g2536	729	PANTHER	NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED	438	718	-	-
	Mtr2g2536	729	Pfam	ATPase family associated with various cellular activities (AAA)	236	364	IPR003959	GO:0005524\|GO:0016887
	Mtr2g2536	729	Pfam	ATPase family associated with various cellular activities (AAA)	512	641	IPR003959	GO:0005524\|GO:0016887
	Mtr2g2536	729	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	94	408	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g2536	Mtr-Chr2	38164706	38178266	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g2536	483	644	Calmodulin-binding Proteins	AT3G56690	27.011	4.69e-11	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g2536	K08900		-	gmx:100778503	571.237